CI01000158_01641190_01654617 (SEPT5, SEPT5B, SEPT5.S)


Basic Information

Item Value
gene id CI01000158_01641190_01654617
gene name SEPT5, SEPT5B, SEPT5.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1641084 ~ 1654617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_01641190_01654617.mRNA
ATGAGCAAACCTTCTCCATACTATGATTTGGAATTTCGCGTTCCAAGAGCGGTCGGGATGACGAGCAGCGCCAGGTACAAGAGCCGGACGGTGAAATCAGTTTCATTCAGTCCTGCACAGCAGGAAAAAGAGTATGTCGGCTTCGCCACCCTCCCAAACCAGGTTCACAGGAAGTCGGTCAAAAAAGGTTTTGATTTCACACTCATGGTGGCAGGGGAGTCTGGTCTTGGAAAGTCCACCCTGATCAACAGCTTGTTCCTCACAGATCTGTACAAGGACAGGAAACTACTGAATGCTGAAGAGCGCATTAATCAGACTGTGGAGATCATCAAACACACCGTTGACATTGAGGAGAAGGGCGTCAAGCTGAAACTGACCATTGTAGACACACCAGGTTTTGGAGACGCTGTCAATAATACGGAGAGCTGGAAGGCCATTACTGACTATATTGACCAGCAGTTTGAACAGTATTTTCGGGATGAAAGCGGCTTGAACAGGAAGAACATCCAGGATAATCGTGTCCACTGCTGCTTGTACTTCATCCCTCCATTTGGCCATGGGCTGCGGCCTGTGGACGTGGAGTTTATGAAGGCACTGCAGGACAAGGTGAACGTGGTTCCACTAATTTCCAAGGCTGACTGTCTGACGCCAGCGGAGATGAGGAAGATGAAGGACAGGGTGAGGGAGGAGATCGAGAAGTTCGGAATCAAAGTGTACCAGTTCCCAGACTGTGATTCTGATGAGGACGAGGAGTTCAAGCAACAGGACCGAGAGCTGAAGGAGAGCACTCCATTTGCTGTGATTGGAAGCAACACGATAGTGGAGGTCAAAGGTCAGCGGGTGCGAGGGAGACTTTACCCATGGGGCATTGTGGAAGTGGAGAATCAGTCCCATTGTGATTTCGTCAAGCTGAGGACCATGTTGATTCGCTCACACATGCACGACCTGAAAGACATCACGTGTGACGTGCACTATGAAAACTACAGGGCGCAGTGCATACAGCAAATGACAAGCAAACTGACCCAGGATAATCGCGTGGAGAGTCCCATCCCGATACTACCACTGTCCACCCCTGACGTAGAGACAGAAAAGCTGATAAAGATGAAGGATGAAGAGTTGCGGAGGATGCAGGAGATGCTTCAAAAAATGCAACAACAGATGCATGAACAGGACCTGTGAATGCCGCCCTCCACAGAAATGGCTGATTATACTTCTGCTTGTCTGCAAGCAGACACATAACACTTTAACATCACACTGAAGGATATGCAGTAGTGAAAGAAATAAA

Function

symbol description
sept5b Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to be located in cytoplasm. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Is expressed in brain and retina. Orthologous to human SEPTIN5 (septin 5).
sept5 septin 5

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K04557 SEPT5, PNUTL1, CDCREL1; septin 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_01641190_01654617.mRNA True 1285 mRNA 0.49 12 1641084 1654617

Neighbor

gene id symbol gene type direction distance location
CI01000158_01602975_01638158 MCTP1B coding downstream 2926 1602922 ~ 1638158 (-)
CI01000158_01595127_01599555 NA coding downstream 40774 1594960 ~ 1600310 (-)
CI01000158_01561252_01564385 ARRDC3B coding downstream 76521 1561252 ~ 1564563 (-)
CI01000158_01534561_01537689 MGC82201, CETN3.L, CETN3, BRAFLDRAFT_115461 coding downstream 102999 1534472 ~ 1538085 (-)
CI01000158_01487198_01495799 NA coding downstream 145178 1486789 ~ 1495906 (-)
CI01000158_01674288_01681153 NA coding upstream 19061 1673678 ~ 1681153 (-)
CI01000158_01689842_01690063 NA coding upstream 34926 1689543 ~ 1690063 (-)
CI01000158_01808271_01810226 NA coding upstream 153343 1807960 ~ 1810531 (-)
CI01000158_01921098_01929676 TACR1B coding upstream 265975 1920592 ~ 1929676 (-)
G364103 NA non-coding downstream 187275 1452257 ~ 1501547 (-)
G364112 NA non-coding downstream 193279 1426023 ~ 1447805 (-)
G364116 NA non-coding downstream 203604 1358156 ~ 1437480 (-)
G364115 NA non-coding downstream 206918 1358463 ~ 1434166 (-)
CI01000158_01262724_01264911 NA non-coding downstream 374501 1262005 ~ 1264911 (-)
G364200 NA non-coding upstream 11313 1665930 ~ 1666140 (-)
G364109 NA non-coding upstream 14773 1669390 ~ 1671108 (-)
G364229 NA non-coding upstream 124593 1779210 ~ 1789155 (-)
G364268 NA non-coding upstream 199994 1854611 ~ 1869953 (-)
G364286 NA non-coding upstream 244331 1898948 ~ 1899444 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other downstream 918572 717291 ~ 722084 (-)
CI01000158_00286848_00307666 NA other downstream 1325695 286545 ~ 307666 (-)
G364203 NA other upstream 33349 1687966 ~ 1688828 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding CM030135.1 CM030135.1 14899812 ~ 14923007 (-)