XLOC_011747


Basic Information

Item Value
gene id XLOC_011747
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 50425604 ~ 50426685 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024771
gtgtggagtttgcatgctctccctgcgttcgcgtgggtttcctccgggtgctccggtttcccccacagtccaaagacataggctaaattgtccgtactgagtgcgtgtatgaatgagtgtgtttggatgtttcctagagatgggttgcggctggaagggcatccactgcataaaaatgtgcgggataagttggcggttcattccgctgtggcgaccccagattaataaagggactaagccaacaagataacgaatgaatgaatgtttcccaaaAATTCAAAGTTTTCTGagacataaaaacacatttttacacacgggaaaatgttttgctgctttAATGTCGTTTACTTCTCTCCATGGTGGATTTTTATGTGCTTGTTAAGCTTTAATAAATGTGTGAAACTCTTCAGACACTGTTCAcaggtgtacggtttctctctagtgtgaatcctctcatgtgttttcaggcttCCAGACTGACTGAATCCCttgttgcagtgtgaacacttgtacggtttctctccagtgtgagtcctctcatgCTTTTTCAGATGATCTACCTGATAAAATCTCTTAttacagtgtgaacacttgtacggtctCTCACCAGTGTGAGTCCTCTGGTGCTGTTTCAATTCTACAGCTGTAATAAACGTCCTCTCACACTCGAAGCACATATGCTCTTTCGCCCCAGTGTGGGTCTTCTGATGTTTTGCTAAATTTGACTGCattgtaaaactctttccacaatcAGAACAGGAATAAGGTTTCTCATTTGTATGTACTATAAGATGCACCTTTAAACCTGAGGagctcaaaaatgttttgctgcattgatcacatttgtgtggcctctctccagtgtggatcatcatgtgtcgattaaggtgtgatgattgtctgaaactcttccc

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006457 protein folding biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024771 True 914 lncRNA 0.43 2 50425604 50426685

Neighbor

gene id symbol gene type direction distance location
XLOC_011746 znf982 coding upstream 19423 50389823 ~ 50406181 (+)
XLOC_011745 syncripl coding upstream 140187 50261603 ~ 50285417 (+)
XLOC_011744 zc2hc1c coding upstream 165822 50248152 ~ 50259782 (+)
XLOC_011742 CU655820.1 coding upstream 234899 50122243 ~ 50190705 (+)
XLOC_011743 galnt16 coding upstream 239033 50127648 ~ 50186571 (+)
XLOC_011748 NA coding downstream 15213 50441898 ~ 50478262 (+)
XLOC_011749 CR382385.1 coding downstream 97888 50524573 ~ 50525944 (+)
XLOC_011750 bmp4 coding downstream 137385 50564070 ~ 50586135 (+)
XLOC_011751 ddhd1a coding downstream 228934 50655619 ~ 50691398 (+)
XLOC_011752 fermt2 coding downstream 275063 50701748 ~ 50787754 (+)
XLOC_011739 CU929037.2 non-coding upstream 824490 49597112 ~ 49601114 (+)
XLOC_011738 NA non-coding upstream 871927 49551893 ~ 49553677 (+)
XLOC_011737 LO018408.2 non-coding upstream 914604 49510866 ~ 49511000 (+)
XLOC_011734 NA non-coding upstream 1004234 49414820 ~ 49421370 (+)
XLOC_011753 NA non-coding downstream 365194 50791879 ~ 50794536 (+)
XLOC_011756 NA non-coding downstream 572588 50999273 ~ 51016383 (+)
XLOC_011757 NA non-coding downstream 773441 51200126 ~ 51203640 (+)
XLOC_011760 NA non-coding downstream 989780 51416465 ~ 51431638 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G745655 LOC106569384 non-coding NC_048572.1 CM023226.2 74105268 ~ 74115014 (+)