XLOC_011748


Basic Information

Item Value
gene id XLOC_011748
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 50441898 ~ 50478262 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024772
GTGAATCAGTGATAGTTTGAAcagcaatatcatggcattccctaggcccaatacttgtgctagatgggtgCATCACTGCCAAGTGCCACCGAATCATTCTGGAGGACCCAAGTAAGAACGCTGAGGAAAAACCATGACAGACCTATCTAATTTCAGAGTGATTGTTCCCAAGAATGTTTTATGATATTCAGAGATGAAACACCCTCAGCACACGAGAAAGGTTTTGCTGCATTGATGTCATTTATTCAGCTTTTCTCCACTGTGGATTTTCATGTGCTTCTTAAGAGTAGACAAATGTGTGAAACTCTTTagacactgatcacatgtgttcggtttctctccagtgtgactcCTCTCATGTGTTTTTAGATATGCTAACCGAGTAAATCGATggttgcagtgtgaacacttgtacggcttctctccagtgtgaaccaACTCATGTGTTCTTAGGTGTACTGACTGATTGAATTGCttgttgcagtgtgaacacttgtacggtttttctccagtgtgaatcctctcatgtgttttcaggtgtAACGGctgactgaatctcttgtcgcagtgtgaacacatgtacggtttctctccagtgtgaattatTTGATGTGCTTTCAGGCTTCCTGACTGACTGAATCTCTtcttgcagtgtgaacacttgtacggtttctctccagtgtgaatcctctggtgcactttcaattctgcagctgtagtaaaagtcttctcacactcaaagcacatatgctctctcacaccagtgtggatcttcttaTGTCGTCTTAAATTTGCCTGCtgtgtaaaactctttccacactcagaacAGTAATACGGTCTCTCCTTTGTATGAACTCTAAGATGGTCCTTCAGCTGTAAATCtctcaaaaatgttttgccgcattgatcacATTTGtgtggtctctctccagtgtggatcatcacccacatagcaaaatttctctggcccagctctggcccacacaatcaggttttgcttggcccacatgccgcagtgaattacggtacatgactggaccaaatctgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024772 True 1048 lncRNA 0.43 2 50441898 50478262

Neighbor

gene id symbol gene type direction distance location
XLOC_011747 NA coding upstream 15213 50425604 ~ 50426685 (+)
XLOC_011746 znf982 coding upstream 35717 50389823 ~ 50406181 (+)
XLOC_011745 syncripl coding upstream 156481 50261603 ~ 50285417 (+)
XLOC_011744 zc2hc1c coding upstream 182116 50248152 ~ 50259782 (+)
XLOC_011742 CU655820.1 coding upstream 251193 50122243 ~ 50190705 (+)
XLOC_011749 CR382385.1 coding downstream 46311 50524573 ~ 50525944 (+)
XLOC_011750 bmp4 coding downstream 85808 50564070 ~ 50586135 (+)
XLOC_011751 ddhd1a coding downstream 177357 50655619 ~ 50691398 (+)
XLOC_011752 fermt2 coding downstream 223486 50701748 ~ 50787754 (+)
XLOC_011753 NA coding downstream 313617 50791879 ~ 50794536 (+)
XLOC_011739 CU929037.2 non-coding upstream 840784 49597112 ~ 49601114 (+)
XLOC_011738 NA non-coding upstream 888221 49551893 ~ 49553677 (+)
XLOC_011737 LO018408.2 non-coding upstream 930898 49510866 ~ 49511000 (+)
XLOC_011756 NA non-coding downstream 521011 50999273 ~ 51016383 (+)
XLOC_011757 NA non-coding downstream 721864 51200126 ~ 51203640 (+)
XLOC_011760 NA non-coding downstream 938203 51416465 ~ 51431638 (+)
XLOC_011761 NA non-coding downstream 1014818 51493080 ~ 51618364 (+)

Expression


Co-expression Network