G363963


Basic Information

Item Value
gene id G363963
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 995019 ~ 996081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU415139
CTTTCATTACAGTTTAGTTAATTACAGAACCACCACTGATTGTGTGACATTATGCATTCAGTACCAAGACTAAATTACATCTCAAAGACAGTTAAGACATGAAACAGGATTACCACAAGCTCTAGATCTCACACAAAACTCAAGACAGTTAAAGGGACAGTGCACTCAGAAATACATCGTCATTTACTCACCCTCATATTAACTCCAAACCTGTGATTTGTGGAAACCTTGTGACTTCTGTGGAAAACAAAAGGCGTTTTTTTTTTTGCATTTCCTCCACGGAAGAAAAAGTCATACAGGTTTAGAACGACATGAGGATGAATAATCAATGACAGAATAACTTTTGGGTGAACTATCCCTGTATTCACATGAAATTTAAGAAAATTTCTGCCTTTACTATATGTGTAAATGTTTTGCCACTCAATTCAATATCCAAACTACGCTGTAGTGAAAAATATAAGCTTGATGACCGTCTAGTGAGGAACTCACACAGGAAGACTCTGCCAGCAGAATCTCGCCATGACATCTCAGAACAACAGGACTAGGCACAATTTCATGGCAAACTCACATTTTCCGCTATATAATTTCAGCACTAGAGTCTAGTGATCACCTGACGGTCATGCCTGTTATAATCAGGAGAATATATATGATATGATTCAGGGGACGAATCACGAAGAGTCATTGTAGGTACAATGCTAAAAAATTAAGAATATTATTATTGGCTAAAAATGCACAGTGATCTGTACAAACAGGTTTAGTTTTGTTCTTTGGGTGACTGTTCAGTATTCCCACAGTTCTGCTTTGAGGCGAAATTGTTTTAGATCAGTGGTTCTCAATTGGTGGGTGAGGATAAAACAACTATTAAACTTTAACATCAATGTCTGCCCAAACCAGCGTTGTTATTTTAACTAAAACTATTAAAATGTTGTTAGTAACTGAAATAAAGCTTAAATAAAACAAATATCAGTAAACTTAAACCTATTTTGGTTAGTTGCAAAAGTCAAAGCTAAAGAAATTTATATATATATAAAAACATTTATTTACAATAAAGTCCCGTTAATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU415139 True 1063 lncRNA 0.35 1 995019 996081

Neighbor

gene id symbol gene type direction distance location
CI01000158_00964222_00966170 NA coding downstream 28849 962628 ~ 966170 (-)
CI01000158_00944536_00948113 STC1L coding downstream 46906 943955 ~ 948113 (-)
CI01000158_00873090_00877118 MARCH5, MARCH5L coding downstream 117144 873032 ~ 877875 (-)
CI01000158_00781706_00786082 NA coding downstream 208739 781579 ~ 786280 (-)
CI01000158_00757981_00771461 TCF7L1, TCF7L1A coding downstream 222582 757485 ~ 772437 (-)
CI01000158_00996425_01012543 NA coding upstream 241 996322 ~ 1013249 (-)
CI01000158_01015366_01021562 RAB7A, RAB7 coding upstream 19214 1015295 ~ 1021562 (-)
CI01000158_01023714_01028130 WDR45 coding upstream 27265 1023346 ~ 1028154 (-)
CI01000158_01103049_01104386 NA coding upstream 106715 1102796 ~ 1104474 (-)
CI01000158_01106641_01108816 NA coding upstream 110481 1106562 ~ 1108816 (-)
G364015 NA non-coding downstream 15451 979337 ~ 979568 (-)
G364011 NA non-coding downstream 26370 968428 ~ 968649 (-)
G364010 NA non-coding downstream 27962 966820 ~ 967057 (-)
G364004 NA non-coding downstream 43999 950802 ~ 951020 (-)
G363984 NA non-coding downstream 64961 926961 ~ 930058 (-)
G364030 NA non-coding upstream 46921 1043002 ~ 1043256 (-)
G363972 NA non-coding upstream 208771 1204852 ~ 1214069 (-)
G364076 NA non-coding upstream 257966 1254047 ~ 1335935 (-)
CI01000158_01262724_01264911 NA non-coding upstream 265049 1262005 ~ 1264911 (-)
G364116 NA non-coding upstream 362075 1358156 ~ 1437480 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other downstream 272507 717291 ~ 722084 (-)
CI01000158_00286848_00307666 NA other downstream 679630 286545 ~ 307666 (-)
G364103 NA other upstream 460053 1452257 ~ 1501547 (-)
G364203 NA other upstream 691885 1687966 ~ 1688828 (-)

Expression


Co-expression Network