G364229


Basic Information

Item Value
gene id G364229
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1779210 ~ 1789155 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU415433
GCAGCCTGAGAGTGTGGCACTGAATAGTAATGTGTTATATGTAAATGAGACAGACCTCCTCTGTTTCCTGTCCAGCTCGTGAGCGCGGCCCTGCAGGCTGTCTGTCAGGACGCGGGCGTCCTGAAGGTCGGAGGTCAACCTCCGGCAGTGGCGTTTTAGCTCTGTCACAGAGCGTTTAGATTGATCAAGCTGAGACTGCAGTTCCTGGACCTTTGTATCCAACAGCTGACGGGCTTCTTTCTCTCTCTCAAGTCTTTCCTCTGTCTGCCGCAGACGCCTGCGCAGAAACTCCACCTCCGTCTGCGCGCATTCCAGCTGCAGCTGCAGCTCACTTTCTGCGTGCGCATGCAGGGATTCACACACACCTGTCGCCACTCCGCTGAGAGCTTCTTTATTCTTGATTTTCTGTTTTTCTTCCTCTAACTGCCTCTCGAGGGCCTCCAAAGACACTTTACTCTGGTCTACACGACTCTGCAGTTCCTTGTTCTCTTTGGTGAGACGCAGTCTTTCCATGCGCTCACTGTCTAGAGCTTGACTCATGGCATCCCCTCTGAACCGCTCATCACTTAATTCAGATACAACAGCGGTTACCTTGGTCTCCAGGTTGTCTGCAGTCTGACGCAGCTCGTTTCGTTCCTTCTCTGACTTTTCCAGACGTCTCCTCAGAGCAGTGATCTCATCCTCTTTGGATCTGAGCCGCTGGTCATCCATGTTGACGTCCAGCAGGGGGCGCACTCTGCACAGCAGCTTCCACCAGCTCCAGCGGGTCACTGCGGTGAGGACTCGCATATTTCTTTGAATACAGCACACTGCCATCTGCTGAACCTTCATGCGGCGGTATTTCTGGCGGCCCAGGTGACCCAGACAGGACGCTTGAAGCTGCACCAGCCAGCCGCTCAACAACTGATCTCTCTGCTGATCTAAAGACCTCAGGACACCACGCTTCATAAACACCCTGCTTGCTCCCAAAACAATGCTTTTCTTGTCCAAATCCAGATCAATCAATAATTCCTCCACGGCCTGATATAAAGGGATGTAAACACAAACAGACAGATCTCAGGCCCTCTTTTGGAACATCAGCTCCACCAAATCAATGAGGGCTGTTCAAGCAAAAACCAGCTAATCAATAAACAAGCTAATAAACCGGGTAATAAATAACGTCATCATTTGACATCATTAAAAATAAATGACATTTCAACAGAGGGTAATGAGGCGCGTGTGCGCCGTGGTGATTCAGGACGTCCAGACCTTCCTCTCGTCTGGGGTAATGAAGACAGAACCGTATCGCTTCATTATGGGAGCAGAGAGGGCCTGAAAACGACAGCGGAAATCACTCAGGGACATGTGCTGCGGGTAGCCTGTTCGGTACAGCTGCAGTGCCGGCAGCAGGTGTGTAGAGTGCAGCTGTACACGCAGTGCTGGGACATCAAAGCCACAGCCATCTGTCTTAGCATTCAAACACTGCAGGAAGACCGGCCGCGCTCGCCGAATCAGATTCACCAGAGCATCCGCCTGCAATTTGACGGCAATGCACTGGGAATGTCTCCTGAGGGCCGCCATCCCTCCACTCAGAGTCTTCCGCACCGTGCCGCTCCTCTGCAGGGATCGCTGAGAGCCGCCCTCCACGCCGCCCAAACCCCGGCAGAGAGGGGGCACGGACGCCCGCAGACCGAACAGGGCCTTCACTGCTCCACTGAGAAGAGAGAAAGAACGAGAGAATTAGGATGTTTTCACACTGAAGCATTCAGTTCAGTTTGCCGTCATAGTTTGGTTTGTTTGTAAGACGATTCAAAATTCACATGCACTCCAGAATGGTTTACACCTGCTATGTTTTGTACACATGAACAACAGTACTGATGATGTTAAAG
>TU415434
GCAGCCTGAGAGTGTGGCACTGAATAGTAATGTGTTATATGTAAATGAGACAGACCTCCTCTGTTTCCTGTCCAGCTCGTGAGCGCGGCCCTGCAGGCTGTCTGTCAGGACGCGGGCGTCCTGAAGGTCGGAGGTCAACCTCCGGCAGTGGCGTTTTAGCTCTGTCACAGAGCGTTTAGATTGATCAAGCTGAGACTGCAGTTCCTGGACCTTTGTATCCAACAGCTGACGGGCTTCTTTCTCTCTCTCAAGTCTTTCCTCTGTCTGCCGCAGACGCCTGCGCAGAAACTCCACCTCCGTCTGCGCGCATTCCAGCTGCAGCTGCAGCTCACTTTCTGTCGCCACTCCGCTGAGAGCTTCTTTATTCTTGATTTTCTGTTTTTCTTCCTCTAACTGCCTCTCGAGGGCCTCCAAAGACACTTTACTCTGGTCTACACGACTCTGCAGTTCCTTGTTCTCTTTGGTGAGACGCAGTCTTTCCATGCGCTCACTGTCTAGAGCTTGACTCATGGCATCCCCTCTGAACCGCTCATCACTTAATTCAGATACAACAGCGGTTACCTTGGTCTCCAGGTTGTCTGCAGTCTGACGCAGCTCGTTTCGTTCCTTCTCTGACTTTTCCAGACGTCTCCTCAGAGCAGTGATCTCATCCTCTTTGGATCTGAGCCGCTGGTCATCCATGTTGACGTCCAGCAGGGGGCGCACTCTGCACAGCAGCTTCCACCAGCTCCAGCGGGTCACTGCGGTGAGGACTCGCATATTTCTTTGAATACAGCACACTGCCATCTGCTGAACCTGAT
>TU415435
GCAGCCTGAGAGTGTGGCACTGAATAGTAATGTGTTATATGTAAATGAGACAGACCTCCTCTGTTTCCTGTCCAGCTCGTGAGCGCGGCCCTGCAGGCTGTCTGTCAGGACGCGGGCGTCCTGAAGGTCGGAGGTCAACCTCCGGCAGTGGCGTTTTAGCTCTGTCACAGAGCGTTTAGATTGATCAAGCTGAGACTGCAGTTCCTGGACCTTTGTATCCAACAGCTGACGGGCTTCTTTCTCTCTCTCAAGTCTTTCCTCTGTCTGCCGCAGACGCCTGCGCAGAAACTCCACCTCCGTCTGCGCGCATTCCAGCTGCAGCTGCAGCTCACTTTCTGTCGCCACTCCGCTGAGAGCTTCTTTATTCTTGATTTTCTGTTTTTCTTCCTCTAACTGCCTCTCGAGGGCCTCCAAAGACACTTTACTCTGGTCTACACGACTCTGCAGTTCCTTGTTCTCTTTGGTGAGACGCAGTCTTTCCATGCGCTCACTGTCTAGAGCTTGACTCATGGCATCCCCTCTGAACCGCTCATCACTTAATTCAGATACAACAGCGGTTACCTGCACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU415433 False 1868 lncRNA 0.52 10 1779210 1789155
TU415434 False 800 lncRNA 0.53 6 1782247 1789155
TU415435 True 569 lncRNA 0.53 4 1785988 1789155

Neighbor

gene id symbol gene type direction distance location
CI01000158_01689842_01690063 NA coding downstream 89147 1689543 ~ 1690063 (-)
CI01000158_01674288_01681153 NA coding downstream 98057 1673678 ~ 1681153 (-)
CI01000158_01641190_01654617 SEPT5, SEPT5B, SEPT5.S coding downstream 124593 1641084 ~ 1654617 (-)
CI01000158_01602975_01638158 MCTP1B coding downstream 141052 1602922 ~ 1638158 (-)
CI01000158_01595127_01599555 NA coding downstream 178900 1594960 ~ 1600310 (-)
CI01000158_01808271_01810226 NA coding upstream 18805 1807960 ~ 1810531 (-)
CI01000158_01921098_01929676 TACR1B coding upstream 131437 1920592 ~ 1929676 (-)
G364109 NA non-coding downstream 108102 1669390 ~ 1671108 (-)
G364200 NA non-coding downstream 113070 1665930 ~ 1666140 (-)
G364103 NA non-coding downstream 325401 1452257 ~ 1501547 (-)
G364112 NA non-coding downstream 331405 1426023 ~ 1447805 (-)
G364116 NA non-coding downstream 341730 1358156 ~ 1437480 (-)
G364268 NA non-coding upstream 65456 1854611 ~ 1869953 (-)
G364286 NA non-coding upstream 109793 1898948 ~ 1899444 (-)
G364270 NA non-coding upstream 113440 1902595 ~ 1907980 (-)
G364272 NA non-coding upstream 119807 1908962 ~ 1909163 (-)
G364282 NA non-coding upstream 128628 1917783 ~ 1919775 (-)
G364203 NA other downstream 90382 1687966 ~ 1688828 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other downstream 1056698 717291 ~ 722084 (-)
CI01000158_00286848_00307666 NA other downstream 1463821 286545 ~ 307666 (-)

Expression


Co-expression Network