XLOC_011767 (odc1)


Basic Information

Item Value
gene id XLOC_011767
gene name odc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51743908 ~ 51760243 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023318
CAGTGCCGAAGCACCGGCTTTTACTCGGTCCGAGAATCAGCAGATCACACCAGCCCGTCGAGCCAGGAGAAATACAGCATTTTTCATTTCCAGCACTCTGGTCTAATGGGAACACTCTTTGTAAATGCGTTTTAAGAATTCTTGCTTGAGAGAAGTACACACCGGCCCTGGCCTTGAGGCTTATCTGAAAGGTTTCAACTTCACTGGTGAACCTCCTTGGCTGTCTGACATCTGTTAGCCACGTTTCAATCCCATCTCTTCCATTCGTCTGTTTCTTTTGCAATCAAATCTTGAACAAACACTATGACGGCTTGCACCGGATCAGACTTTGACTTCGCCTTCCTGGAGGAGGGATTCTGTGCGCGCGATATCGTGGAGCAGAAGATCAATGAGTCCTCGCTCTCAGATGATAAAGATGCCTTCTATGTGGCGGATCTGGGGGATGTCCTGAAGAAGCACCTCCGCTGGCTGCGTGTTTTGCCCCGCATCACGCCGTTTTACGCAGTGAAGTGCAACGATAGCAGGGCGGTGGTCACCACACTGGCGTCTCTGGGAGCCGGGTTCGACTGTGCCAGCAAAACGGAGATCCAGATCGTGCAGTCAGTGGGTGTGGATCCCAGCAGGATCATCTACGCCAACCCGTGCAAGCAGGTTTCGCAGATCAAATACGCCTCGGCTCACGGCGTGCAGATGATGACGTTCGACAGCGAGGTGGAGCTCATGAAGGTGGCCCGTAGCCACGAAAATGCCAAGCTGGTTCTCCGCATCGCCACAGACGACTCGAAGGCTGTTTGCAGGCTGAGTGTGAAGTTTGGAGCGACGCTGAAGAGCAGCCGGCTGCTGCTGGAGAGAGCAAAAGAGCTCGGGCTGGACGTGATCGGGGTCAGTTTCCATGTGGGCAGCGGCTGTACGGACCCGGAAACATACAGCCAGGCCATCTCAGATGCTCGCTATGTTTTCGACATTGGGGCGGAGCTGGGCTATAACATGAGCCTGCTGGACATCGGCGGAGGATTTCCAGGCTCTGAGGACACCAAACTCAAGTTTGAAGAGatTGCTGCTGTTATTAACCCTGCGCTGGATAAATACTTCCCTGTGGACTCTGGCGTGAGGATCATCGCTGAACCCGGCCGTTATTATGTAGCATCTGCTTACACACTGGCGGTCAACATCATCGCCAAAAAGGTCATCATGAAGGAGCAGTCAGCCTCCGATGAAGAAGAGGATGTGTCCAATGACCGAACCCTGATGTACTACGTGAATGACGGCGTTTATGGCTCCTTCAACTGCATCCTGTATGATCATGCGCACGTGTTGCCAACTCTGCACAAGAAACCCAAGCCCGATGAGCGCATGTACCCCTGCAGTATCTGGGGCCCGACCTGCGACGGTCTGGACCGCATTGTGGAGCAGTGCAGCCTGCCGGACATGCAGGTGGGCGACTGGCTGCTGTTCGAGAACATGGGCGCCTACACCGTCGCCGCATCCTCCACCTTCAATGGCTTCCAGAAACCCGATATTTATTACATCATGTCCCGAACAGCCTGgcagTGCATGCAGCAGATTCGTGCCCAGGGGATTCCTGCACTTCCATTGGAGGAGCCGAGCGCTGGAAACGTGCCATCCCACTGCGGGCGCGAGAGCAGTCTGGATGTTCCCGCCAAACCCTGCCCGACTCAAGTGCTGTAGCAGAAGACGCTCAACCAAACCTGCTCTCGGGTCCAGCTAATGCAGATCTGTGTTACTGATCTCCAACTTCTGATCTAAACGCCTCAGAGCTGAGGAGAAAACAAACGCACAGTCCAATTCTTATTTCCTGTTATCTTTGTTTTAACTGGTTTTTGTTGATTGTCTGTATTTGTATTTCGAGGCCAGATGCTTGAGCGAGGACTTCTTCCTCTTCCTCAGTGACCATTTCCATTTTATACTTGATtagtaacttaattttttaatattgagTTGAAGTCtttgtattataattattcaGAGCTGAGCTTGTATGCCACTGGTGCATTTGAAACGGACGTGAAAGAGATGGGATTGCATCTATTATGCTTTCCTATGGAaactgctttttgttttttttaagtattacgtttttttgtatttttatataaataaagatgcTGTAAAATGGCaa
>TCONS_00023319
AATGGGAACACTCTTTGTAAATGCGTTTTAAGAATTCTTGCTTGAGAGAAGTACACACCGGCCCTGGCCTTGAGGCTTATCTGAAAGGTTTCAACTTCACTGGTGAACCTCCTTGGCTGTCTGACATCTGTTAGCCACGTTTCAATCCCATCTCTTCCATTCGTCTGGATGATAAAGATGCCTTCTATGTGGCGGATCTGGGGGATGTCCTGAAGAAGCACCTCCGCTGGCTGCGTGTTTTGCCCCGCATCACGCCGTTTTACGCAGTGAAGTGCAACGATAGCAGGGCGGTGGTCACCACACTGGCGTCTCTGGGAGCCGGGTTCGACTGTGCCAGCAAAACGGAGATCCAGATCGTGCAGTCAGTGGGTGTGGATCCCAGCAGGATCATCTACGCCAACCCGTGCAAGCAGGTTTCGCAGATCAAATACGCCTCGGCTCACGGCGTGCAGATGATGACGTTCGACAGCGAGGTGGAGCTCATGAAGGTGGCCCGTAGCCACGAAAATGCCAAGCTGGTTCTCCGCATCGCCACAGACGACTCG
>TCONS_00023320
CTTCTATTGGCTGAGCTTAAAGAAGGACTTGCTTGTGATTGGTTGACAGGGTTGCCTGTTATAGTCCGTGCAAATAGGGGTTTCCTTATTGGGTAACCGGCATATTCTTGGGAGGAGGGACTTATTTAACCGGCTTTCTGTGAAAAATGTGACTGAGGATATGCGTGTGCGCGGTTTACCACAGCTACTAAATTAAATACTAATTTCACGCATAATTCGCCGTTACAGCACGCATTTTGAcctaaatatttatcaaatgaaAACTTCATGCAATTCTTGCTTGAGAGAAGTACACACCGGCCCTGGCCTTGAGGCTTATCTGAAAGGTTTCAACTTCACTGGTGAACCTCCTTGGCTGTCTGACATCTGTTAGCCACGTTTCAATCCCATCTCTTCCATTCGTCTGTTTCTTTTGCAATCAAATCTTGAACAAACACTATGACGGCTTGCACCGGATCAGACTTTGACTTCGCCTTCCTGGAGGAGGGATTCTGTGCGCGCGATATCGTGGAGCAGAAGATCAATGAGTCCTCGCTCTCAGATGATAAAGATGCCTTCTATGTGGCGGATCTGGGGGATGTCCTGAAGAAGCACCTCCGCTGGCTGCGTGTTTTGCCCCGCATCACGCCGTTTTACGCAGTGAAGTGCAACGATAGCAGGGCGGTGGTCACCACACTGGCGTCTCTGGGAGCCGGGTTCGACTGTGCCAGCAAAACGGAGATCCAGATCGTGCAGTCAGTGGGTGTGGATCCCAGCAGGATCATCTACGCCAACCCGTGCAAGCAGGTTTCGCAGATCAAATACGCCTCGGCTCACGGCGTGCAGATGATGACGTTCGACAGCGAGGTGGAGCTCATGAAGGTGGCCCGTAGCCACGAAAATGCCAAGCTGGTTCTCCGCATCGCCACAGACGACTCGAAGGCTGTTTGCAGGCTGAGTGTGAAGTTTGGAGCGACGCTGAAGAGCAGCCGGCTGCTGCTGGAGAGAGCAAAAGAGCTCGGGCTGGACGTGATCGGGGTCAGTTTCCATGTGGGCAGCGGCTGTACGGACCCGGAAACATACAGCCAGGCCATCTCAGATGCTCGCTATGTTTTCGACATTGGGGCGGAGCTGGGCTATAACATGAGCCTGCTGGACATCGGCGGAGGATTTCCAGGCTCTGAGGACACCAAACTCAAGTTTGAAGAGatTGCTGCTGTTATTAACCCTGCGCTGGATAAATACTTCCCTGTGGACTCTGGCGTGAGGATCATCGCTGAACCCGGCCGTTATTATGTAGCATCTGCTTACACACTGGCGGTCAACATCATCGCCAAAAAGGTCATCATGAAGGAGCAGTCAGCCTCCGATGAAGAAGAGGATGTGTCCAATGACCGAACCCTGATGTACTACGTGAATGACGGCGTTTATGGCTCCTTCAACTGCATCCTGTATGATCATGCGCACGTGTTGCCAACTCTGCACAAGAAACCCAAGCCCGATGAGCGCATGTACCCCTGCAGTATCTGGGGCCCGACCTGCGACGGTCTGGACCGCATTGTGGAGCAGTGCAGCCTGCCGGACATGCAGGTGGGCGACTGGCTGCTGTTCGAGAACATGGGCGCCTACACCGTCGCCGCATCCTCCACCTTCAATGGCTTCCAGAAACCCGATATTTATTACATCATGTCCCGAACAGCCTGgcagTGCATGCAGCAGATTCGTGCCCAGGGGATTCCTGCACTTCCATTGGAGGAGCCGAGCGCTGGAAACGTGCCATCCCACTGCGGGCGCGAGAGCAGTCTGGATGTTCCCGCCAAACCCTGCCCGACTCAAGTGCTGTAGCAGAAGACGCTCAACCAAACCTGCTCTCGGGTCCAGCTAATGCAGATCTGTGTTACTGATCTCCAACTTCTGATCTAAACGCCTCAGAGCTGAGGAGAAAACAAACGCACAGTCCAATTCTTATTTCCTGTTATCTTTGTTTTAACTGGTTTTTGTTGATTGTCTGTATTTGTATTTCGAGGCCAGATGCTTGAGCGAGGACTTCTTCCTCTTCCTCAGTGACCATTTCCATTTTATACTTGATtagtaacttaattttttaatattgagTTGAAGTCtttgtattataattattcaGAGCTGAGCTTGTATGCCACTGGTGCATTTGAAACGGACGTGAAAGAGATGGGATTGCATCTATTATGCTTTCCTATGGAaactgctttttgttttttttaagtattacgtttttttgtatttttatataaataaagatgcTGTAAAATGGCaagtgttttgctttttgttcacACGACGACAGAACTGCAGTATTAATGCAGGGTGTCTGCGAGGTCTTAAAGCCCGTGCACACCAAGACGTTTATTGCTCTCGTTTCTGttaacgtttaacgcctcgtgactaaataaagggcgtcaatgtgatcgtgcacaccaacgcgcaataTGGCAGGcgtaaaagcgtcatttaaaaaagaaatacccCATGCTCGTTTTTTgtttgacgccagtgaaaatcgattgGGTTTAAATCCGGAAAAACGTCTTGAAAACGCTAACGATAAATtcaaacgaaaagcgtcctggTTTGTACGAGCCTTTAAAGTACGGAACCCCGTTCCCgccactgaattaaaaaaaaataataattaaaaacaaatttagtcagacttgcgagttataaagtcagaattcgaAATTAagttgcaattctgacttaataactcgcaattctgacttaactagCAATTTTGACTTGCTTAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcgcaattctaacttacttaactcgcaattctgacttaaaaacTCGCAATTTTGACTTGCTAAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcaattctgacttaactcgcAATTTTGACTTGCTAAACTTGCAATTCTGATTTACTTAACTCGTAATTCTGGCTTAAAAACtcgcaattttgactttttaataaaaaatatatgtgtatataacaAAATGTTAGGCCTTAAAAGGTCTTACATTTATAGAAATTTTGTGTTGTacatcttaaatcattttaaacgtgTCTTAATCTTTCTTTATGTGAAGTTACCCAATCATCGCTACCAGTTATTCAGTCTaaaaacttttttactttttccaTTTACCAAAAAGCAATATGTTGTATTTATCTTTCTtacaataactttttatttgcataaattaaattgtattatagttttaGTTTAGTCCATAAACCCAGCTTAGAGGAacaagccaggcttattttggtaagtcaggtttattaatggcggatTCGGTGTCATAAATCAAATTTGCGATAGTACTAAATGTTACTATGGCAACatatgctgggaaactagcctgtCCGGGGCAGGCTAACTCTCAGGCTTAGTGAAGTTCAAGCTTAATCAAGCTAATGTTAACATTCACCTGCtgtaatttgatgtcattttaattcacttaacctcttaataatgaataaaacttCAGTCATGTAATAGTAAATATACATACACCACATCTTTAAGAACAAAATGGTAATACACTTAAATTCAAATGTTATTGCAAacagtgatgcagtggcgcagtaggtagtgctgtcgcctcacagcaagaaggttgctgcttagagcctcggctcagatggcgtttctgtgagtttgcatgttctccctgtgttagcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgatacgggtgaattaggtaggctaaattgtctgtagtgtgtgtggaagtttcccagacatgggttgcagctggaagggcatccactgcgtaaaaacgagctggataagttggtggttcattccactgtggcgaccctggattaataaagggactatgaatgaatgaatgttattgcaaacaaaacaaatacaaacttcaacatttaaactcttttttttttttaatgtttatgttgattttttttcctgtttattaaaattttactttataattttactcagcatattataacatatTATGTACTCATTTGTGGACTGTGATCTTCAGTTTACTTGTTGTTAGATTAGCTTCAATTTTTGCTTTGGcactgaataatctaatgtatatgcacaaacatattATCGTGAAGCATTCtgaagaaaatattactttaaaatgttGAGGGATGTACTTTGCTAAATATGTAGTATATGAATTACAAAATTTAATAAAGGAAATATATTAAGAAAGCAATGACTGATATTAAGAAGCAACTACATTATTTTAAGAAGGACTTTAAAGCTGCAAACCCTGAGTGGTATAATCAGGTGATGGATCCGGGCCGAGCGGTAGcctcacttttatttaaagagatTTTCCCACCGGTGCGGCTCATTGAAGtcagtttttttactttaatccCCGCTCTTCTTGACCACTTTTATGAACCAGCCCCctggtctgcatccagacctctcTCAAAACTTCAGGTGTTGTAGTTTTGCGGTCCTTATGTCTGTATTTTTGTGGTTACTACCGTTCAAAACGTCCGTGTTTCTTTTCATAGTGGCGTTTCTTGGGGtaaaataaacctttacttaTCTGCATATTCACTTGAACTGTCGATTCTCTTTATCAAGTTACTTTTCCGTAAGGATCCGGACAAGAGTCCGGGCTTTGAGAAGCTCTGCAGTTCATGCTTAGTTATTAGTATTTACTGTAATCGTGGGTGTAGCGCCATCTAGTGATGAGGACTCAATGTTTCTAATAGCAGCAAGGCTAGAAGTttgatccattcattcatccattttcttttcggttcagtccctttattaatctagagtcgccacagtggaatgaaccgccaacttatccagca
>TCONS_00023321
AAAATGTGACTGAGGATATGCGTGTGCGCGGTTTACCACAGCTACTAAATTAAATACTAATTTCACGCATAATTCGCCGTTACAGCACGCATTTTGAcctaaatatttatcaaatgaaAACTTCATGCGTAAATTGACTTCTCAGAACACACTTTAATACCGCAATGGCTGAAAAGTTCAACTTGATAATACTTTCCTTGTGGTTTTTAATGCTTTCAGAATTCTTGCTTGAGAGAAGTACACACCGGCCCTGGCCTTGAGGCTTATCTGAAAGGTTTCAACTTCACTGGTGAACCTCCTTGGCTGTCTGACATCTGTTAGCCACGTTTCAATCCCATCTCTTCCATTCGTCTGTTTCTTTTGCAATCAAATCTTGAACAAACACTATGACGGCTTGCACCGGATCAGACTTTGACTTCGCCTTCCTGGAGGAGGGATTCTGTGCGCGCGATATCGTGGAGCAGAAGATCAATGAGTCCTCGCTCTCAGATGATAAAGATGCCTTCTATGTGGCGGATCTGGGGGATGTCCTGAAGAAGCACCTCCGCTGGCTGCGTGTTTTGCCCCGCATCACGCCGTTTTACGCAGTGAAGTGCAACGATAGCAGGGCGGTGGTCACCACACTGGCGTCTCTGGGAGCCGGGTTCGACTGTGCCAGCAAAACGGAGATCCAGATCGTGCAGTCAGTGGGTGTGGATCCCAGCAGGATCATCTACGCCAACCCGTGCAAGCAG
>TCONS_00023322
CTTGAACAAACACTATGACGGCTTGCACCGGATCAGACTTTGACTTCGCCTTCCTGGAGGAGGGATTCTGTGCGCGCGATATCGTGGAGCAGAAGATCAATGAGTCCTCGCTCTCAGATGATAAAGATGCCTTCTATGTGGCGGATCTGGGGGATGTCCTGAAGAAGCACCTCCGCTGGCTGCGTGTTTTGCCCCGCATCACGCCGTTTTACGCAGTGAAGTGCAACGATAGCAGGGCGGTGGTCACCACACTGGCGTCTCTGGGAGCCGGGTTCGACTGTGCCAGCAAAACGGAGATCCAGATCGTGCAGTCAGTGGGTGTGGATCCCAGCAGGATCATCTACGCCAACCCGTGCAAGCAGGTTTCGCAGATCAAATACGCCTCGGCTCACGGCGTGCAGATGATGACGTTCGACAGCGAGGTGGAGCTCATGAAGGTGGCCCGTAGCCACGAAAATGCCAAGCTGGTTCTCCGCATCGCCACAGACGACTCGAAGGCTGTTTGCAGGCTGAGTGTGAAGTTTGGAGCGACGCTGAAGAGCAGCCGGCTGCTGCTGGAGAGAGCAAAAGAGCTCGGGCTGGACGTGATCGGGGTCAGTTTCCATGTGGGCAGCGGCTGTACGGACCCGGAAACATACAGCCAGGCCATCTCAGATGCTCGCTATGTTTTCGACATTGGGGCGGAGCTGGGCTATAACATGAGCCTGCTGGACATCGGCGGAGGATTTCCAGGCTCTGAGGACACCAAACTCAAGTTTGAAGAGatTGCTGCTGTTATTAACCCTGCGCTGGATAAATACTTCCCTGTGGACTCTGGCGTGAGGATCATCGCTGAACCCGGCCGTTATTATGTAGCATCTGCTTACACACTGGCGGTCAACATCATCGCCAAAAAGGTCATCATGAAGGAGCAGTCAGCCTCCGATGAAGAAGAGGATGTGTCCAATGACCGAACCCTGATGTACTACGTGAATGACGGCGTTTATGGCTCCTTCAACTGCATCCTGTATGATCATGCGCACGTGTTGCCAACTCTGCACAAGAAACCCAAGCCCGATGAGCGCATGTACCCCTGCAGTATCTGGGGCCCGACCTGCGACGGTCTGGACCGCATTGTGGAGCAGTGCAGCCTGCCGGACATGCAGGTGGGCGACTGGCTGCTGTTCGAGAACATGGGCGCCTACACCGTCGCCGCATCCTCCACCTTCAATGGCTTCCAGAAACCCGATATTTATTACATCATGTCCCGAACAGCCTGgcagTGCATGCAGCAGATTCGTGCCCAGGGGATTCCTGCACTTCCATTGGAGGAGCCGAGCGCTGGAAACGTGCCATCCCACTGCGGGCGCGAGAGCAGTCTGGATGTTCCCGCCAAACCCTGCCCGACTCAAGTGCTGTAGCAGAAGACGCTCAACCAAACCTGCTCTCGGGTCC
>TCONS_00024782
CCCGTTCCCgccactgaattaaaaaaaattaataactcgcaattctgacttaactagCAATTTTGACTTGCTTAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcgcaattctaacttacttaactcgcaattctgacttaaaaacTCGCAATTTTGACTTGCTAAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcaattctgacttaactcgcAATTTTGACTTGCTAAACTTGCAATTCTGATTTACTTAACTCGTAATTCTGGCTTAAAAACtcgcaattttgactttttaataaaaaatatatgtgtatataacaAAATGTTAGGCCTTAAAAGGTCTTACATTTATAGAAATTTTGTGTTGTacatcttaaatcattttaaacgtgTCTTAATCTTTCTTTATGTGAAGTTACCCAATCATCGCTACCAGTTATTCAGTCTaaaaacttttttacttt

Function

symbol description
odc1 Predicted to enable ornithine decarboxylase activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be active in cytoplasm. Is expressed in neuromast and ovary. Orthologous to several human genes including ODC1 (ornithine decarboxylase 1).

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0033387 putrescine biosynthetic process from ornithine biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0005737 cytoplasm cellular_component
GO:0004586 ornithine decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00330 Arginine and proline metabolism
ko00480 Glutathione metabolism

ZFIN:

id description
ZDB-GENE-010816-1 Predicted to enable ornithine decarboxylase activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be active in cytoplasm. Is expressed in neuromast and ovary. Orthologous to several human genes including ODC1 (ornithine decarboxylase 1).

Ensembl:

ensembl_id ENSDARG00000007377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023318 False 2140 mRNA 0.51 11 51743908 51757551
TCONS_00023319 False 545 mRNA 0.54 5 51744012 51751238
TCONS_00023320 False 4967 mRNA 0.43 11 51744450 51760243
TCONS_00023321 False 734 mRNA 0.48 4 51744593 51749521
TCONS_00023322 False 1434 mRNA 0.56 9 51746830 51757134
TCONS_00024782 True 540 lncRNA 0.31 2 51757892 51758506

Neighbor

gene id symbol gene type direction distance location
XLOC_011766 nol10 coding upstream 23105 51682429 ~ 51720803 (+)
XLOC_011765 zgc:113142 coding upstream 105702 51627209 ~ 51638206 (+)
XLOC_011761 NA coding upstream 125544 51493080 ~ 51618364 (+)
XLOC_011768 si:ch211-168d23.3 coding downstream 4067 51764310 ~ 51789748 (+)
XLOC_011769 NA coding downstream 61453 51821696 ~ 51825482 (+)
XLOC_011770 flvcr2a coding downstream 145810 51906053 ~ 51929012 (+)
XLOC_011771 CU633997.1 coding downstream 147828 51908071 ~ 51908186 (+)
XLOC_011772 ttll5 coding downstream 180525 51940768 ~ 52053951 (+)
XLOC_011762 NA non-coding upstream 247502 51493931 ~ 51496406 (+)
XLOC_011760 NA non-coding upstream 312270 51416465 ~ 51431638 (+)
XLOC_011757 NA non-coding upstream 540268 51200126 ~ 51203640 (+)
XLOC_011756 NA non-coding upstream 727525 50999273 ~ 51016383 (+)
XLOC_011773 NA non-coding downstream 369449 52129692 ~ 52130818 (+)
XLOC_011774 NA non-coding downstream 371053 52131296 ~ 52135039 (+)
XLOC_011775 NA non-coding downstream 511054 52271297 ~ 52272517 (+)

Expression


Co-expression Network