XLOC_011768 (si:ch211-168d23.3)


Basic Information

Item Value
gene id XLOC_011768
gene name si:ch211-168d23.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51764310 ~ 51789748 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023323
CTTTGAAGGAAGCGCGCTCTCGTgacgttcgttcattcatttattgaatgTGAAGATGATGGGGATCCACGCGCGCACATGCACACGCCTCCACCTCTGTGTTTATCCTCCTCTCCCACccgtctcctcctcctcctcctcctccatcagCATGTGTGCGGGGATGGATGCCGCACAGGCCCGTCTGGAAGGACAATAAAAACGCACAAAGGCGAGGATCCCGCAGACTTCGTGATGTCCTCACTGAAGAGAgtgttcaagtgtgtgtgtttcctctcaCCCACTCAATGAAATGCAATCAGTGAAGTCTCCCCCAACTCTCTGAATGGAGCCACCATAAAACCAGTTGAAATGGAGGATGAAGATGGTACGTGTTTACTGGATGTTTTGTGtgacCCTCAAGCCCTAAATGATTTTCTTCATGGGACAAATGAGCTGTCAAGTGGAGACTTACTCATTAATCCATCCTCTGGAGAACCATCGCTCTTCACAGACACTCCGAGCCCTGGATCTCTGTTAGCAGATGATGCTAGTTCTCAGGACACTCCTGGATCTGGCTGTGTGGATCTCTCCTTTTTGGAGGAAGCTCTGCTGGCATCACCAGCATCCTCACTGGGACGAGGCAGTCCAGAGGAGTTGCAGGAACACCCCAATGTCCAAACCGTGGAGCAGCAGAAAGAGATCTGTGACATTCTCCAGCAGAGTCTCCAAGAGGCAGACATCACCGAAGACACTTTGGCATTAGAGGCAGGTCTTGCTGAGACAGCAGAAACTCTTGCTCTCTCTGATGCAACGTCGTATCTCTCCAAACCATTGAGCATCCCTGGTTTAATCTCATTACCAAAGGACACCCAAACCGCAGTGGAGCCTCCACAGCCATCGTTATTAGCTGTTGGCCCAGGCTGCCCTTCACTCAAACCTACAGGAGCCCAGCTCATGAGTCTGCTTCCTGGGAATGTCTTCCCCACACCTCCACTCGAGGCACCCTTTTCTATTAATTCAGCACAAAGCACCAGCATGATTATCCAAAAGTCCCTGCCGAGTCTCATAGGTCGCCAGATGCTGACCTCCACTGTTAGAACAGTTGCTCCATCGGGGGTCATGTTACAAAAAATGCCTCAACCCATTCAGCCTAAGTTACCGGTCAACATCCAGCCGAGGCTTGTACAGATCAGTCCCAGGCCAACAGGACAGAAACCTTTGCCAGGCATTGCCTTCATCTCAGCCAACACATCACAGAGTGTCTTGTTCTCCCCTTCTGTTGGTCCCAAGCAAGCACAGTCCGCAGGGAGTGTCAGCAAACCTGTCAGCTTCAATCTAGTTGGTCAGGGAGGCCCCATTGTCCTTCAGCCCCAGGATCCTTTTCAGGGTCAGAGACATTTTTTTCTGCCAAGCCAAGCACCTGCAGCTTTGACCCAGTCTACCAGCATTCCAAGGTGTCTTTTTAGTGCACCAAGCAATCAGATGTCTAATAAACCCAATGTTGAGTCTTCTCAAATTGTGACTGTTCAGCCGAGGCAAATTAACTTCGGCCCTATTTTTACATCCCCAACTGGACAGCTTACTCTAAAGCAAGGGGCCCTTTTGTCGGGGTCCTTACCAATTCAGTCTAGACCTCCTACAGTCTTCCAGATGCCAGCACAGATAGCAGGAACCTATGCGTCACAAGTGCAGGGGCAGCATGATGCAATAGTTCACAGCGCTGTAGGAAACCAGATCACACTGATTAACCATGCCAATATGCTCATTTCTGATATGACCACCGTACCAATAGTGAACGGTCAGCCAGTGATGCAAAGTCTGCCTACGGTGCCTCCAGACCAAAGAGCTTTGTCAGAGGGACCTGAGAGGAAGATGAGCCTAATCTCCAATCCAGCGCTTCTCTTGCCTGAGAAGACCATAGATGATGAAGGGAAAGTCAAAGAAACACTTCAAgAGAGCAGATTGATTCCTCCAGCTTCAGCGGAATCACCGAGTGTAGAGATTCACCCTCAGCCCTCTCCAGTATCACTACACTCATCACCAGATGCTAGTTGTACCCCCGAGCCAGATTTGTCATTATCCCCACAACTGATCAGCCAAACAGGAGCGCAACACTTTCCCGAAGGAGAGCAGAACCCTTTGCATCAAATACAGGCTTTAATACATCTTCCCCAACAGTATACACTTAATTCGTCAGACACCGAAAGGTCCTTAGCTACAAATGTACTCGTGCAAATGGACAATAACATCTCTACTGCCTCAAGTGAAGTGGAGCATTCGCTCACAGCTTTGACTGCATCTGAGACTTTCCCTTCATTGTGTGAAAGCGAAGAGAGCTCTATGACATTATACCATCATTCAGAGCACAGTGATATTCTGCAATCTCCCATTGACCAGTGCTCTGTAGGGACCGTCGGCACATCCTTTGAGCTGACCTCAGCACCAGATGTGCAGGAGTCATCCATGTCAGTTGCTCTTGGTTCTGATGCCAGATTTCAGGAAGGGCCGGCCTCTAGTCAGAGCCCTTCTTCTTCCACTGAGAAGTTTAGATGTCTGCCGCATCTGGGACAAACTCATGTGCTAACCGAGCATGGAAGAACCACAGAGCCAACAACCCAGGAGAACATGCTGAAATACATGCAATATGAAAACGAGCTCACGGTCCCTCATGGTAAGAACAACAGGAGCATGATTTCTTCAGACCAGCTAGAAGAGATGGTACACCTTGAGCCCAGACTGGAACCCCTGGACAAAAAGACCTATTCAGAGCTTCAGAAGGAGTTTCAGACAACATCCACATACAAGGACCTCAAAGAGGAGAAATTGACATTAGCAGAGAAGCAACAAAGGGTTAAACAGCAGATGCTTTTGGACCACACTGCTGTTCTCAGCCCAAACACTTCAGCTCCGTTTGTCTCAGTGGAGGATGCTGTCAGACATCTGTTGCCTTACCATTCTTGTGCTAAAGCCCTTCCCAGCCAGGCGGACTTCATCTCAGTGGACAAGCAGTTTGAGTGTTTCTCGGTTGTTCTGTTGAAACGAATCAAAGACATGCTGAACAAGTACAGACAACTTCTTCTGGCTGAATCTCAGCAGGACAGCCCGTCAGCAGAGATGGTGATGCTGGAGCGCTTGTTCCTCCAATCCGAGAGACTCTCACTGGTGGAGGACAAACGCAGAGCCAGAAGAGAGCCAGAGTCTATCCTGATGTCCCAGACTAAGAGCTCGACTCCGGTATCATCCGTCAAGGCTGGCCTTTCTTGTTGTCCCTCATCTCCACCGTCATGGACCTTGCAGTCTGATAGACCTCCAGGCCTGAAGACATATCGCTCCAGCAGCAAAGGAGCGCTCCGACTCACTATCAAACAAGAGTCAGGATCCTCTGCAAGCGAAGCCGCAAATGCAGTCTGCGGATTTAAGCGAAACTACAGCAAGCAGGTAACTGAGGGGAAAGACCAAGTCATCAAGCCTGCTTTGTTAAATGTTGAcgagagcaaaagtgaattcAATAAGCTGAAATTGAACCTTAACAAGGAAACGGAAAGTACAGATAGCGATTTGCAGAATCTTACCGATTCTGTGACAAATCCAGACTACATAGCTCAGAGGAGGGAAGGCTTATTTCCAGAGCAGTGTTCTCCAGTGCTGAAGAGAACCAGGCCGATGGCTTCAACAGCAGAGTCTCTTTTAGATGACGGGGAACTGAGCGAAGACCTGCAAAGTGCCATAGACAGCATCCTAGAGCTGCAGAGACTGCAGGGGTCTGGAGCAGGGCTAAAAACCAAGAACCATCAGCTTCATGCTCTGGAGCAGGCAGTCGGCAGCATGCTAGGTGGACAACTTTGAGATGACAAAAAGTGCTAGTTGAAAGGAAACGCCTCAGGACTTACCTTTTTCTGTGCAGTACATGTGGCTGATGTATCCTGCAGTCCACATCCAGCAGAGACCAAtttaatccattcattttccagaggaaaaaaaaagtgctatttattattatttattgtgcaaaacaGAGTGTATAGAATCAGCCAGGGCTTTTGAATCCTTGGGATTTTTTGTGAATACAGTTTATAAGTCTATGGGTTTAATATAACTTCAAAAACACAAGTGCAGTTTGGCTGTATGTATATGCCGTTTTAATGTGAATGTGTCAATGATAAGACAACTACTCTTTCGATAGGGACTTAaaggagagttcatccaaaactgaaaattctaacatcatttactctccc

Function

symbol description
si:ch211-168d23.3 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-572 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex.

Ensembl:

ensembl_id ENSDARG00000086027

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023323 True 4220 mRNA 0.48 14 51764310 51789748

Neighbor

gene id symbol gene type direction distance location
XLOC_011767 odc1 coding upstream 4067 51743908 ~ 51760243 (+)
XLOC_011766 nol10 coding upstream 43507 51682429 ~ 51720803 (+)
XLOC_011765 zgc:113142 coding upstream 126104 51627209 ~ 51638206 (+)
XLOC_011764 pxdn coding upstream 152222 51517750 ~ 51612088 (+)
XLOC_011763 CABZ01067581.1 coding upstream 262738 51499789 ~ 51501572 (+)
XLOC_011769 NA coding downstream 31948 51821696 ~ 51825482 (+)
XLOC_011770 flvcr2a coding downstream 116305 51906053 ~ 51929012 (+)
XLOC_011771 CU633997.1 coding downstream 118323 51908071 ~ 51908186 (+)
XLOC_011772 ttll5 coding downstream 151020 51940768 ~ 52053951 (+)
XLOC_011773 NA coding downstream 339944 52129692 ~ 52130818 (+)
XLOC_011761 NA non-coding upstream 145946 51493080 ~ 51618364 (+)
XLOC_011762 NA non-coding upstream 267904 51493931 ~ 51496406 (+)
XLOC_011760 NA non-coding upstream 332672 51416465 ~ 51431638 (+)
XLOC_011757 NA non-coding upstream 560670 51200126 ~ 51203640 (+)
XLOC_011756 NA non-coding upstream 747927 50999273 ~ 51016383 (+)
XLOC_011774 NA non-coding downstream 341548 52131296 ~ 52135039 (+)
XLOC_011775 NA non-coding downstream 481549 52271297 ~ 52272517 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000311_00233188_00240845 NA coding CI01000311 null 232744 ~ 241057 (-)