XLOC_011772 (ttll5)


Basic Information

Item Value
gene id XLOC_011772
gene name ttll5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51940768 ~ 52053951 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023327
CCTATTGCGCGCATGCGCATCTCAGCGGCTGTCAGCTGGTTGTTATAGTAACAAGCGTCAGGAGTTTAGCACCGGTGAACAGTGGAGCTAACAGTTAATAATTACACTAAGAGCTCTCACATTACACAACCAGCTGCATTAAGAAGATTGGAGAAGAGAGCTGTCATGCACATGCTGAGCTGACACACACAGACGGAGATGCCAGACGCTAGAGAGCAGAAGGACGAATCCAAGTCATCGTCTGAAGATGAGCTGGAGAAACAGCCGTGTATCGCCTGGAGTGGTGTCAGTAAACGCATTCCTGTGCTGCTATTCTGTGCTGAAGCCATTGTGTCTAAAGATGTGGCCATCCGCTCTGTTGGAGAAAAATATAACTTGGCCTTCAAGATTGTGCGAACAGAGAGTCGTCTTGTGCGTGGCATACTGGTCAATCATGGATTCCATGAGGTGCACCCAAACAGCAATGATTTTAACCTGATGTGGACCGGCTCACACCTGAAGCCTTACCTTCTGCGCTCTCTGCAGGATTTCCAGAAAGTCAACCATTTTCCCAGGTCGTACGAGCTCACGCGGAAAGACCGGCTCTACAAAAACATCCAGAGGATGCAGCAAAGCCACGGCTTTCACAACTTCAGCATCGTACCACAGACGTTTGTGCTGCCCGCAGAGTACCAGGAATTCAGCAACTCCTTCAGCAAAGACAAGGGTCCGTGGATCATCAAACCAGTGGCGTCCTCCAGAGGTCGAGGCATCTACCTAGTCAGCAATatcaGTCAGATCCCATTGGATGAGAATATTTTAGTGTCGCGGTACATCAGCAATCCTCTGCTGATTGACGATTTTAAGTTTGATGTGCGTCTGTATGTCCTGGTGACCTCTTACGACCCTCTCGTCATCTACCTGTATGAAGAGGGCCTGGCCAGgtttgCCACGGTGAAGTATGACCACGCCACTGCAAACATCAAGAACCAGTTCATGCATCTGACCAACTACAGCGTCAACAAGAAGAGCAGCGACTACGTCAGCTGCGATGACCCCGAAGTAGAGGATTATGGGAACAAATGGAGCATGAGTGCAATGCTGAGATATTTGAGACAAGAAGGCAAAGACACCACACTGCTGATGGGCCAGATTGAGGATCTGATCATTAAAGCTGTTCTGAGTGCTGAGATCCACATCGCCACGTCCTGCAAGATGTTTGTTCCTCATCGGTGCAACTGCTTCGAACTGTATGGTTTCGACGTTCTCATTGATTCCAACCTCAAACCCTGGCTCTTGGAAGTGAACCTCTCCCCCTCTTTGGCATGCGACGCTCCTCTCGATTTGAAGGTGAAGGCCAGCATGATCTCCGACATGTTTTCTCTCGTGGGTTTTGTGTGTCAGGATCCTTTATTACGGCAGCCACGCGCTGAGAGAGCTGGGTTTGATCTAAGATTGAAGATTCCCACCCAGAAGCATCAGCGTCAGAGACCGGCGTCCAGCAGCAGTGCTGACCCACAGACTCAGAGGGAGAAACACGGCTGTAAACACACAGACGACACGCTGAGTCTGTCAGCAGAGGAGATGAAGGTGCTGAGGAGGGTCCAGGAGGAGTATGAGCGCAGGGGGGGATTCATACGCATCTTTCCCACTCCAGACACCTGGGAGATTTACAGtGGTTATCTGGAGTACAAGACGTCTCTGAATGCCATGTTGGCTAATAAACTTTTCCATAGAAGATCCCTGACGTCCCGCTCGAGGGTCCAGGCGACTGATGGTATTTCTCTGGTGCTCGGGGCCTTTTACACACATCATGTGGTCCAGTATGAAAGAAAGCTGCTTACACTCGAGGCGCGAAAGAAGAGGCGGAAACCTGCACGAGTTTCCAGAAGAAGACCACCGACAGGTGTCAAGTGCTCTCCGTCGCCTCACACCAGTGAGAATGAGGATGGGGTGGAGGGACAGATGGAGGTCCAGTCATCTGACCAGCACACACAGCCCAAAGTCAATCTGCTCCACATCCTCCAGCAGGGCTGGGACCTCAGTAAAGTTCAAGCCCGCATGGCCTTCTCCTCATACCTGCACCGCGTTCAGCTGCGCCTGCTAGCTGAGAGCAGAGCGAACAGAAGCCCGGCCTGGACACAGAAGGAGCACGATCAGATGgagctGGTTGTACGTTTTCTAAAGCGAGCCAGCAGTAATCTGCATCAGGGCATGAGTGTGAAGGAGCCCAGTCTGCATCTGTGTCTGCAGGAGCGCCAACACATCCTCTCACAGCAGCTCGAAAGCTTTATCCAGCTCTACGACCAGGAAACCAAGCAAATGGTGCAGAGTTTGGAGCCGATGACAGATGAAGGTCGCTGCATCAACTCCACCGTTTTCCAGGAGTTCATTCTGGAGGCCAGCGAAAGCGACCTGGAGGAAGTGCTGACCTTCTACACTCAGAAGAACAAGTCTGCCAGTGTGTTTCTGGGCACAAAGTGTCACCGAGTCAAGAAGAGCAGCGAGGAGAAGCCGGAGACTGCACATGTCAACACAGGCACATCTGGAGGTGTAGAGAATACAGCGGCAATCAGCAAAACCCAAAGTGCAGACAGTAACACAGCAACTCCAGCAGGAGACCAGCGGCAAAATCATCCAACCAGCACTGAAAACTGTGCTGCAGCTAAAAACACCGGCAAAATCAAGTGCATCTCGTTGCGAAATCCCACCCAAAGCGGAGACTGCAGCGCTAATGAAGCGCCAGCCAACGACACAGAAGACATAACCAGGAAAACTGCAGTCAGAAACAAGAAAACGCAGCTAAAAACAGCGTACAGCGCAGCTCTGGAGTGTGAACACATCATTTTACAGCACGCCGTCCCTCCAGAACCACCACCGTACCTGCAGCCGCCCCCACACCCGCTAGCCAACACCAGCACATGGGCTTCAGCTACGCACACAGCTCCCTCCATCTCCATCCAGAGACCCTCACGGCCGTCCTCTGCAGGACACGTGATTCACAGCTCCAGCATCAGTAAGTTGAGGCCTGGGTCAGCCGGTGTTGTCAAGGAGACGGACTCTCTGACGACCCAGGCTCAGTCCAACCAGCAGGCCATCGTGTCTGCTCTGAGGAAACTGGTGGAGAAGCAGACGGCACGCCAGTACAGCACATCCAGCCACATCAGCCTGCTCACACAACACCTGACTAATCTGAATCTGGCCAATGGGCTCTTCAGCAGAGGCGGACTCACGTTGGCTCCCGGGGTTCCACATGAACCTGTGAGAACGGTTCATAAAGACACCACCGCCGGGAACTCTAGTCTCAGGCCTGCGTGTGAATCCGAGTCGGTGTGTGATGGTGATCCGGGCAGTCAGAAGCAGCGGTCGGCCGCGGGCAGCTATCAGCTTCAGTTCGCCATCCAGCAGCTCCAGCAGCAGAAACTCAGATCCAGACAGCTGCTGGACCAGAGCCGCACACGCCACCAGGCTGTTCTGGCATCCCACGCACACACACCAGCGGCTTCAGCTCGACCTGTGGCTCCCAGCAGTCCTGTGAAACAGCCCTTCATTCGCACCCTGAACCAGACGAGTGGGATCCTGACGCCCAAACCCCCCAGCAGCACCCCGAGAGACGGACGCGCACGCAAGACTCTCACACACTCCACAGTGCACAGGACAGCTTTATCTGAGACTCCAGCTGCTCACACGACCACCAGTGGACAACATGTGGTGTATGACACTGTGTGCGCAAAGACAGgTCTGTCGGTGTACAGTAAACTCTTCCACACTCAGGGCTCCAGGAACAGATGA
>TCONS_00024787
ATGGAGGTCCAGTCATCTGACCAGCACACACAGCCCAAAGTCAATCTGCTCCACATCCTCCAGCAGGGCTGGGACCTCAGTAAAGTTCAAGCCCGCATGGCCTTCTCCTCATACCTGCACCGCGTTCAGCTGCGCCTGCTAGCTGAGAGCAGAGCGAACAGAAGCCCGGCCTGGACACAGAAGGAGCACGATCAGATGgagctGGTTGTACGTTTTCTAAAGCGAGCCAGCAGTAATCTGCATCAGGGCATGAGTGTGAAGGAGCCCAGTCTGCATCTGTGTCTGCAGGAGCGCCAACACATCCTCTCACAGCAGCTCGAAAGCTTTATCCAGCTCTACGACCAGGAAACCAAGCAAATGGTGCAGAGTTTGGAGCCGATGACAGATGAAGGTCGCTGCATCAACTCCACCGTTTTCCAGGAGTTCATTCTGGAGGCCAGCGAAAGCGACCTGGAGGAAGTGCTGACCTTCTACACTCAGAAGAACAAGTCTGCCAGTGTGTTTCTGGGCACAAAGTGTCACCGAGTCAAGAAGAGCAGCGAGGAGAAGCCGGAGACTGCACATGTCAACACAGGCACATCTGGAGGTGTAGAGAATACAGCGGCAATCAGCAAAACCCAAAGTGCAGACAGTAACACAGCAACTCCAGCAGGAGACCAGCGGCAAAATCATCCAACCAGCACTGAAAACTGTGCTGCAGCTAAAAACACCGGCAAAATCAAGTGCATCTCGTTGCGAAATCCCACCCAAAGCGGAGACTGCAGCGCTAATGAAGCGCCAGCCAACGACACAGAAGACATAACCAGGAAAACTGCAGTCAGAAACAAGAAAACGCAGCTAAAAACAGCGTACAGCGCAGCTCTGGAGTGTGAACACATCATTTTACAGCACGCCGTCCCTCCAGAACCACCACCGTACCTGCAGCCGCCCCCACACCCGCTAGCCAACACCAGCACATGGGCTTCAGCTACGCACACAGCTCCCTCCATCTCCATCCAGAGACCCTCACGGCCGTCCTCTGCAGGACACGTGATTCACAGCTCCAGCATCAGTAAGTTGAGGCCTGGGTCAGCCGGTGTTGTCAAGGAGACGGACTCTCTGACGACCCAGGCTCAGTCCAACCAGCAGGCCATCGTGTCTGCTCTGAGGAAACTGGTGGAGAAGCAGACGGCACGCCAGTACAGCACATCCAGCCACATCAGCCTGCTCACACAACACCTGACTAATCTGAATCTGGCCAATGGGCTCTTCAGCAGAGGCGGACTCACGTTGGCTCCCGGGGTTCCACATGAACCTGTGAGAACGGTTCATAAAGACACCACCGCCGGGAACTCTAGTCTCAGGCCTGCGTGTGAATCCGAGTCGGTGTGTGATGGTGATCCGGGCAGTCAGAAGCAGCGGTCGGCCGCGGGCAGCTATCAGCTTCAGTTCGCCATCCAGCAGCTCCAGCAGCAGAAACTCAGATCCAGACAGCTGCTGGACCAGAGCCGCACACGCCACCAGGCTGTTCTGGCATCCCACGCACACACACCAGCGGCTTCAGCTCGACCTGTGGCTCCCAGCAGTCCTGTGAAACAGCCCTTCATTCGCACCCTGAACCAGACGAGTGGGATCCTGACGCCCAAACCCCCCAGCAGCACCCCGAGAGACGGACGCGCACGCAAGACTCTCACACACTCCACAGTGCACAGGACAGCTTTATCTGAGACTCCAGCTGCTCACACGACCACCAGTGGACAACATGTGGTGTATGACACTGTGTGCGCAAAGACAGgTCTGTCGGTGTACAGTAAACTCTTCCACACTCAGGGCTCCAGGAACAGATGAATGACCATCAGCTGCTCTCTGGGATACTTTTACACActcatgaaacccccctgtcaGAAACTCACAGCCTC
>TCONS_00024507
GTCCACAGGACAGCTTTATCTGAGACTCCAGCTGCTCACACGACCACCAGTGGACAACATGTGGTGTATGACACTGTGTGCGCAAAGACAGgTCTGTCGGTGTACAGTAAACTCTTCCACACTCAGGGCTCCAGGAACAGATGAATGACCATCAGCTGCTCTCTGGGATACTTTTACACActcatgaaacccccctgtcaGAAACTCACAGCCTC

Function

symbol description
ttll5 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in cone-rod dystrophy 19. Orthologous to human TTLL5 (tubulin tyrosine ligase like 5).

GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005929 cilium cellular_component
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-100922-236 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in cone-rod dystrophy 19. Orthologous to human TTLL5 (tubulin tyrosine ligase like 5).

Ensembl:

ensembl_id ENSDARG00000036793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023327 False 3771 mRNA 0.53 32 51940768 52053880
TCONS_00024787 False 1898 lncRNA 0.56 12 51996111 52053951
TCONS_00024507 True 215 lncRNA 0.51 2 52048041 52053951

Neighbor

gene id symbol gene type direction distance location
XLOC_011770 flvcr2a coding upstream 11756 51906053 ~ 51929012 (+)
XLOC_011771 CU633997.1 coding upstream 32582 51908071 ~ 51908186 (+)
XLOC_011769 NA coding upstream 115286 51821696 ~ 51825482 (+)
XLOC_011768 si:ch211-168d23.3 coding upstream 151020 51764310 ~ 51789748 (+)
XLOC_011767 odc1 coding upstream 180525 51743908 ~ 51760243 (+)
XLOC_011773 NA coding downstream 75741 52129692 ~ 52130818 (+)
XLOC_011774 NA coding downstream 77345 52131296 ~ 52135039 (+)
XLOC_011775 NA coding downstream 217346 52271297 ~ 52272517 (+)
XLOC_011776 esrrb coding downstream 246067 52300018 ~ 52386518 (+)
XLOC_011777 NA coding downstream 419807 52473758 ~ 52474091 (+)
XLOC_011761 NA non-coding upstream 322404 51493080 ~ 51618364 (+)
XLOC_011762 NA non-coding upstream 444362 51493931 ~ 51496406 (+)
XLOC_011760 NA non-coding upstream 509130 51416465 ~ 51431638 (+)
XLOC_011779 NA non-coding downstream 499753 52553704 ~ 52590848 (+)

Expression


Co-expression Network