XLOC_011783


Basic Information

Item Value
gene id XLOC_011783
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 52767304 ~ 52792053 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024511
tacagtTGTATGGGGTtgaaacttttattatgaaaaccaTACAGAGTAACCAGGAAGACAAAATGGCTGCACCTCATGGCAAGTAAAGTAGAATTTATGTTTCCCTGCTTCAGTTATATTCATCTGGATTTAAGAAGCATAAGAAGTGCTATAAGAAGTTCCTCTTTTTGTATTAAGCAGCCAATAAAAGCTGGAGAAATGGTGGCGTTTGTGGCAGTGCATCATGGGAATATGGCGGACAGAAGGAAGCAGACACAGATGTGTGGAGAAGCCCGAGGCGTCTGATGAAGAGAAGATCCGTCTGTCTGTGGTCCCCCGGCGCGGGACGTCCCGAACGCTCACTGTCTGAGGGAAAACTCTGCGCTCGCGGGGAGAAGAAGAACTGAGAGAAACAACGGCCATCATTTATCCACAGCTCAGGGAATCATGTCAGCATCACCGTTTATACAGCTGAAGACTAAATCATTCCCCTCCTGTGAAATCTCAACTCCTCAGAGGGaaggttttttatttatgtagttatTTTTGAGTACAATTCACAATGAACAACATTAAATACCACACAAGAGCATACAGACATCTACATatctaaataatcttgttttagaTCATTTACccggcagattattttgcttgttttaagaaaaaactctcttcattttgactcattatttctgaaaacatgagaaaatgcttgtttatttaacaacttttagatatttggactcaaaacaagacaaaaatgatgcatttgaatgtttttacAGCGTGTAACTAGCGAGCATCTGGCTGCCACCCAAGCCAGCGGTGTCAGTGGAGAACAATAGCGTTCATTAGCATCATTAATCAGCTGCGATCCGTCATTAAGACCCTCAGCAGCAGCGTCATCTGCAGTCAGAGATTCTCCTCCACGGCGCAGCAGATGTGCAGATCTTTATTGCAGGAGCAGCAGGAACCTGCACATCTCTTCATCTGCTGCTCTTCGTCTCAtctgtccacacacacactctctcttaatCGTTACAAGAGAACAGAGCTgatccagcacacacacacacacatctaacttCTGCTTCAACACATCACTGAGAAGACTGAAACCACATCAGTACTGTATATACTGTGTACAGACCTGGAGCCTGCCAGATCTTCAGCTGATGGGGACTCAATCACTAGTAAAAGACCCCTGTGCCCGTATTCACAAACATCTTGAAGTTGGAAGTTAAGATTGTCCTCTTTACCTCTTACTTTTTATTCTTTGGGAACCAGCTGGATCATTGAAAGATGGGTGTGGCTAACAGAATAGGGGAAGATTTGAATGCCAGTTTGCTCTAAGCTGTGGAGCATTCCACTGTCCACTGGAGTGACCGTCGGCCCCACCTGCTGCAGGATGCTTTCAGATGCCTGACGATGAAACAAGGAGCTAAACTCTACAGTCAAAAtcttattattcattttaaacacttCCTCCCGTGAAGGCAGTGCAGAAAGGAGACagtgataactccaccctaaaggactgatagccccaccctaaatgactgattactccaccctaaatgactaataaccccgccctaaatgactgatagccccaccctaaatgactaataaccccgccctaaatgactgattactccaccctaaatgactaataaccccgccctaaatgactgatagccccaccctaaatgactaataaccccgccctaaatgactgatagccccgccctaaaggactgataacttcACCCTTAATGATTAATAACCTCTCTTAAAAGGACCGATAGTCCCGCCCCAAAAAAACAGTgaccccgccctaaaggactaataattTTACCCTAAAAAACAGAAAGCCACAGCGGATGGATAGTCCTGTCCCAAATGACTAATAACCATGCCCTAAATTACTGAGAATCCTACCCTAAAGGAATGATAACTCCACCCTTAATGACTAATAACCACGCCCTAAATTACTGAGAATCCTACCCTAAAGGAATGATAACTCCACCCTTAATGACTAATAACCACGCCCTAAATTACTGAGAATCCTACCCTAAAGGAATGATAACTCCACCCTTAATGACTAATAACCACGCCCTAAATTACTGAGATTCCTATTCTAAtggactgataactccacccttaATGACTAATAACCACGCCCTAAATTACTGAGAGTCCTACTCTAATGGACTGATAActacaccctaaatgactaataaccACGCCCTAAATTACTGAGAGTCCTACTCTAATGGACTGATAACTCCACCATAAATGACTAATAACCACGCCCTAAATTACTGAGAGTCCTACTCTAATGGACTGATAACTCCACCATAAATGACTAATAACCACGCCCTAAATTACTGAGAGTCCTACTCTAAtggactgataactccacccttaATGACTAATAACCACGCCCTAAATTACTGAGAGTCCTACTCTAAtggactgataactccaccctaaatgactaataagcatgccctaaattactgagaatcctaccctaaaggactgataactccaccctaaaggacagatTACTCTCCCCTAATTTActaataaccccaccctaaatgactgatagccccaccctaaatgactaataaccccgccctaaatgactgatagccccgccctaaaggac
>TCONS_00024798
GGCTGCACCTCATGGCAAGTAAAGTAGAATTTATGTTTCCCTGCTTCAGTTATATTCATCTGGATTTAAGAAGCATAAGAAGTGCTATAAGAAGTTCCTCTTTTTGTATTAAGCAGCCAATAAAAGGAGCGCCGGATCTCCTGCTGTTTGTATGCATATTTCAGGACAGCACATGCTGAGCTCAGCCCATTATTAGCAGCAGAAGCTGGAGAACGGCGAGCTCCAGACACTCTCCGATGGAAACGTTCCCACTTTATCAGCCAGTGTAATTGCTGTCTTGTTTGGTTAAGAGATTAGGAGGTTGAGTCTCTTTGTGTGGTCGTGCTGATTGTGCAAACAGAGGACAGAAATGCTCAGAAAACACACTCGACTGACTGCAGACCGATGAAGCTGCGCAGCGAGACCCTAAAACTAAAACTAGCGGGAGCGGATCATGAACAcgataaagagttcagatgcagaagCCTTTACAGTGCCGGCTGCGTTTGTCTTCTGAAATCAGCATTTTACAAAACCTCTTATATAGTTATGTTGATAATTTTACTGCAAACAACGAGTTTCTGTCTTATCTAGTCAAATAAATGAAACTCtca
>TCONS_00024797
GGCTGCACCTCATGGCAAGTAAAGTAGAATTTATGTTTCCCTGCTTCAGTTATATTCATCTGGATTTAAGAAGCATAAGAAGTGCTATAAGAAGTTCCTCTTTTTGTATTAAGCAGCCAATAAAATTTCAGGACAGCACATGCTGAGCTCAGCCCATTATTAGCAGCAGAAGCTGGAGAACGGCGAGCTCCAGACACTCTCCGATGGAAACGTTCCCACTTTATCAGCCAGTGTAATTGCTGTCTTGTTTGGTTAAGAGATTAGGAGGTTGAGTCTCTTTGTGTGGTCGTGCTGATTGTGCAAACAGAGGACAGAAATGCTCAGAAAACACACTCGACTGACTGCAGACCGATGAAGCTGCGCAGCGAGACCCTAAAACTAAAACTAGCGGGAGCGGATCATGAACAcgataaagagttcagatgcagaagCCTTTACAGTGCCGGCTGCGTTTGTCTTCTGAAATCAGCATTTTACAAAACCTCTTATATAGTTATGTTGATAATTTTACTGCAAACAACGAGTTTCTGTCTTATCTAGTCAAATAAATGAAACTCtca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024511 False 2659 lncRNA 0.43 2 52767304 52792053
TCONS_00024798 False 593 lncRNA 0.43 3 52767368 52776334
TCONS_00024797 True 560 lncRNA 0.42 2 52767368 52776334

Neighbor

gene id symbol gene type direction distance location
XLOC_011782 NA coding upstream 95570 52668974 ~ 52671734 (+)
XLOC_011781 NA coding upstream 104874 52658039 ~ 52662430 (+)
XLOC_011780 angel1 coding upstream 123336 52612866 ~ 52643968 (+)
XLOC_011779 NA coding upstream 176456 52553704 ~ 52590848 (+)
XLOC_011778 dlst coding upstream 213857 52524355 ~ 52553447 (+)
XLOC_011784 meis2a coding downstream 30369 52822422 ~ 52921236 (+)
XLOC_011785 CABZ01078350.1 coding downstream 49777 52841830 ~ 52842772 (+)
XLOC_011786 NA coding downstream 230378 53022431 ~ 53024198 (+)
XLOC_011787 NA coding downstream 232485 53024538 ~ 53075608 (+)
XLOC_011788 dph6 coding downstream 364477 53156530 ~ 53197232 (+)
XLOC_011777 NA non-coding upstream 293213 52473758 ~ 52474091 (+)
XLOC_011775 NA non-coding upstream 494787 52271297 ~ 52272517 (+)
XLOC_011789 NA non-coding downstream 429979 53222032 ~ 53230765 (+)
XLOC_011797 NA non-coding downstream 589163 53381216 ~ 53459043 (+)

Expression

Expression of XLOC_011783 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network