XLOC_011802 (srsf10b)


Basic Information

Item Value
gene id XLOC_011802
gene name srsf10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 53427931 ~ 53447683 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023365
GTTGAGCGCAGCCGCTGTTTTGTTTCCAGGCCTCCGTCGCTGCAGGACTGAAGGCGCCACAGAGCCGCGTGGAGAGACGGAGGCTACGACACCGAATAAACGGAAAGTGAACAATAACCGGCGCTAATCGATACCGCAGACTCTCATCAACCATCGGTATAATGTCCCGGTACATGAGGCCGCCGAACAGCTCACTGTTTGTCCGAAACATCTCCGACGAGTCCCGGCCGGAGGATCTGCGGCGAGAGTTCGGCCGATACGGGCCCATTGTGGACGTCTACATCCCGCTGGACTTCTACTCGCGCCGGCCTAGAGGATTCGCCTACATCCAATTTGAAGATGTCCGAGATGCAGAGGACGCCCTGCACAACCTGGACCGCAAGTGGGTGTGTGGACGGCAGATCGAGATCCAGTTCGCTCAGGGAGACCGAaagactccGGGTCAGATGAAGAATAAGGAACGCTCATCTCCGCGCAGCTCTCGATACGAGGACTCGGACCGGCGCAGACGCTCGCGCAGCCGCAGCTACGACAGACGCCGTTCCCGCAGCCCGTCATACGACAGGCGCCGCCGCCGCTCCGACAGCCCgcgagaGTCCAGAGGAAGAACACACAGCAGACGCAGCCGAGAGCAtgacagGCACCGGGGGTCTACACGTGACCACCATCGCTCCCGAACTGATGCCGCGTCCCGCAGCCGCAGCCCGTCCCGCTCCAGAGCCCGCGGGGGCCGGCGGGAGTCAGACGGGgcccgctcacacacacactctgccagCCCACAGCAGAACCACAGCACAGCAGAGAACAAGCACAGCGCAGGGgacgacacacacatacacacacgctctGCATCTCGCTCGCGCTCGCGCTCCCGCTCCTGGGCCGGACGCAAATCCTGGGGCCACTGAAGCCGGAGCCGGAGCCGCGCTCGCCAGGACAGTCCAGCCGTCTGATGGGTTATTTTATAAGGGAATCGAGAGTTTTCTAGCGCTCATgaagatgtgtgtgtgcgtgtgtgtgtgtgtgcctgcgtgcgtgcgtgcatgtgtgtgtgcgtctgcgtgtgcgtgtgtgtttaccAGTGCAGCTCTGCTGAACGAGCGATGGACAGACCTTTTCTTATGTTTTAGTGTGTCGCGGGGCGTCTTCATGTGTTTTATTGTGAACTCTGCTCGTCTGTTTGTACCTCAGAATCAAATAAATTTCATTTCCAGA
>TCONS_00023366
ATGTCCCGGTACATGAGGCCGCCGAACAGCTCACTGTTTGTCCGAAACATCTCCGACGAGTCCCGGCCGGAGGATCTGCGGCGAGAGTTCGGCCGATACGGGCCCATTGTGGACGTCTACATCCCGCTGGACTTCTACTCGCGCCGGCCTAGAGGATTCGCCTACATCCAATTTGAAGATGTCCGAGATGCAGAGGACGCCCTGCACAACCTGGACCGCAAGTGGGTGTGTGGACGGCAGATCGAGATCCAGTTCGCTCAGGGAGACCGAaagactccGGGTCAGATGAAGAATAAGGAACGCTCATCTCCGCGCAGCTCTCGATACGAGGACTCGGACCGGCGCAGACGCTCGCGCAGCCGCAGCTACGACAGACGCCGTTCCCGCAGCCCGTCATACGACAGGCGCCGCCGCCGCTCCGACAGCCCgcgagaGTCCAGAGGAAGAACACACAGCAGACGCAGCCGAGAGCAtgacagGCACCGGGGGTCTACACGTGACCACCATCGCTCCCGAACTGATGCCGCGTCCCGCAGCCGCAGCCCGTCCCGCTCCAGAGCCCGCGGGGGCCGGCGGGAGTCAGACGGGgcccgctcacacacacactctgccagCCCACAGCAGAACCACAGCACAGCAGAGAACAAGCACAGCGCAGGGgacgacacacacatacacacacgctctGCATCTCGCTCGCGCTCGCGCTCCCGCTCCTGGGCCGGACGCAAATCCTGGGGCCACTGA
>TCONS_00023367
ATCTCCGCGCAGCTCTCGATACGAGGACTCGGACCGGCGCAGACGCTCGCGCAGCCGCAGCTACGACAGACGCCGTTCCCGCAGCCCGTCATACGACAGGCGCCGCCGCCGCTCCGACAGCCCgcgagaGTCCAGAGGAAGAACACACAGCAGACGCAGCCGAGAGCAtgacagGTCATGCAGTCGCTGCGCTTCGCTCTGCAGCCGGCGGTGGAGGAGCTGTGTGTGGACTGGAGGCTGTCTCCGCTCGTCCGCTCGCTGTTCCAGGGTCAGAGGCGCTGCTGAGGGGGCAGAGCTCAGTGGAGAGCAATAAAGCTGTGATGATCAAATACAAGCTGAAGAACACACCGATGACCAACCAGCTGCAGTTTACACTCACACCAGCGGGAGACACTggATGTCAGATGTTGgagtgtgttcttgtgttcatcATTCTGCTGTGTCCTGATCTTCAGTGATGGTGGTCCAGTATCTCTGTCTCTTCATCAGTAATCCGCTTCTCTTCTGCCAGAGTCACTGGTCGTGTTCAGAGCTGGGTCTAACACTGATTAAAGCTCCTCTAACCCGTCTCTGTGGAGTCAGCATCAGTGTTCCAGGATGGTCATACACGACTGTAAAACACTCTCTCACCTCTGTGCACTTTTGATTGGTCTTTCACAGGTATTGCAGAGGCGATGATCTGTCCAATCACCTTGTGCGTGCCTCAGTTAACGTCACGCTTCCTCACACACTGAGCTTCTGAGAGTTCAG
>TCONS_00023369
acgggCTGAAACTGCCTGGACTCACCGTTGGTCAGGCTGTCGAGGACTCCAGCTTTCTCCAGATATCTCCTGAACTGCTCACGCTTCGACTCGGATGCCTGAAACAGAAGAGAAACACACATTACAGAAACAGTTCATCAGGCGGTGTTGTCTACAGCAGAGTCATGCAGTCGCTGCGCTTCGCTCTGCAGCCGGCGGTGGAGGAGCTGTGTGTGGACTGGAGGCTGTCTCCGCTCGTCCGCTCGCTGTTCCAGGGTCAGAGGCGCTGCTGAGGGGGCAGAGCTCAGTGGAGAGCAATAAAGCTGTGATGATCAAATACAAGCTGAAGAACACACCGATGACCAACCAGCTGCAGTTTACACTCACACCAGCGGGAGACACTggGTATTGCAGAGGCGATGATCTGTCCAATCACCTTGTGCGTGCCTCAGTTAACGTCACGCTTCCTCACACACTGAGCTTCTGAGAGTTCAGCATGACGAGTGAAGGAGACCAGCGCAGCACAGAGCCCTGGAGCGTGCGCTGACCCTGGAGACGCTGACGGACTGGACGCGGTCAGACATGATGGATGTGTTGGAGGTGGAGGTGTCTCTGCAGCTGCGGGTGGAGGAGTGACTGGAACTGAAGATTTCAGCGGAGTATGTGCGGGCGGAGAGCTGCTGCTGTCCACGGTGGTGCACCAGTCCTTCCTGGAGGTGAACGAGGAGGGCACGGAGGCGGCGGCCACGGCGGCGGTGATGATGACCCGCTGCCTGATGCGGGTTGAGCGCTTCTGTGCTGACCACCCATTCCTGATGCTCATCCGACACAACCCGACCGGCAGTCTGCTGTTCTACGGCCGCGTCTGCAATCCCTGAGTGCtattaaaacactgcagtccccGAGCGCTAATAAAACACTCCAGTGAA
>TCONS_00024806
GCGGTGACCGCATGCAGCCCAAAGCGAGCAGCAGTATGAGAGTTCCGCTAGTGCTAACGCTCTGCTCTTCGCTAACGCTAGCGTCTTCTCTCCGCAGGTCATGCAGTCGCTGCGCTTCGCTCTGCAGCCGGCGGTGGAGGAGCTGTGTGTGGACTGGAGGCTGTCTCCGCTCGTCCGCTCGCTGTTCCAGGGTCAGAGGCGCTGCTGAGGGGGCAGGTGAGGGTCACAGTCACTCTGAGTCTGGGGTACGTCAGGCTAAAGGCACTGATCAGCTGACCATGAGCATCGCCATCGCCCGCTCAGCCTTCACTCCAACAGCGCTCTGAGGTTCTGCTGGTCAACACTACAGAAGagagtttgaagaatgctggcgCCCGTCCACATGATGCTGTGGAAGTGGATGGtgaaccagcattcttcaaaacatctcccTCTGTgtgcagcagacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacagcactctgAGATGAGCTGTCCTATTactgtgtgagcgtgtgtgtgtgcttatgtgtgtaagtgagtgtgtgtgtgtgtgtgtgtgtgtgcatgatgcatgtgtgtgtgtgtgtgtgtgtaagagtgtgagCACAGATGAAGCTCCAgtaaactgcttcagtccagttttgcTCTTCATTTCATTGAGAGACACGAGAGCGCTGACCCTAacctcagacagacagacagacgccgCTCACTCctcatgatgatgaagatgatgaagatgatgatctctGCATTCTGAATCTGATCTACCTCTCGTCACAGAGCTCAGTGGAGAGCAATAAAGCTGTGATGATCAAATACAAGCTGAAGAACACACCGATGACCAACCAGCTGCAGTTTACACTCACACCAGCGGGAGACACTgggtaaccacacacacacacacacacacacacagacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacagacacacacaggcaTACACAACTTCACTATCTGCTCTGACAATCTGGCTCTGCTAGTTTGGCTAGTttaccaggtgtgtgtgtgtgtgtgtgtttgtatatatatgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtcagcactcATATCTTACAGTATTAACCGTACAGCTTCTCCAGTGGTGCGGTGCTTTCAGCCTTCTGTGTGTTCTTtaatttttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgatcacaGATGTCAGATGTTGgagtgtgttcttgtgttcatcATTCTGCTGTGTCCTGATCTTCAGTGATGGTGGTCCAGTATCTCTGTCTCTTCATCAGTAATCCGCTTCTCTTCTGCCAGAGTCACTGGTCGTGTTCAGAGCTGGGTCTAACACTGATTAAAGCTCCTCTAACCCGTCTCTGTGGAGTCAGCATCAGTGTTCCAGGATGGTCATACACGACTGTAAAACACTCTCTCACCTCTGTGCACTTTTGATTGGTCTTTCACAGGTATTGCAGAGGCGATGATCTGTCCAATCACCTTGTGCGTGCCTCAGTTAACGTCACGCTTCCTCACACACTGAGCTTCTGAGAGTTCAGCATGACGAGTGAAGGAGACCAGCGCAGCACAGAGCCGTGAGtgttaaacagacacacacacacacacacacacacaattccatCTCTTCGCACAGGTTACCTGCTGTCTGCGTAAACCTGTACTGAACTATTATCTGCAGAGTTGTTGAGACCAGTTTAagctcttttctttatttttctttagtaTTTTATTTGAACTAACAAAATCAAACTGGCCTGCTTTTCTGATGAATGAGGGAACATGCGCATCTGCAGTCATGTGTGAAGCCTGCGGCAGCGTCAGGTGTCTGTTAcccactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgttttattttctgtagccatttttttaaagggccatgaaaccccctcgtttcagcagggtgttttcacacctcttctttggaaaaagtcagaaaagtgggggtgtccagctctgttaaggggggagtgtcggagaaactaaagtgggagggtgtgggagtgtctatttgggcacgcgcgagtttcagtcaaaatacacaggagaaagggatggtgtttaacctacatggacatctgtagtcgaattatttgccaaattattaaatgtcggactttaactgcagttcggctctttcattcagggaattcattcatgcccctcgcgacaaatgagatatcTGATTCGAGatactgctctaagcgtgtatttttcatgcaatgtttgataccgcacggcgaatgacagaaaaaaaactccgcatttcccggaaacttagatgcacacggcaggtagcgtccgaaagccgcgtgtgttattccggtcacaaaatgcggtgctaacatgtttgcactcaatgcaatagttaacttatctgatacgaacaaactgaatatacaaagagcactgatcgctcacttaccaaatctgtagagacaggacaatcaccagcaactagagccgcgtctttatgaagagaagactacatccggaatccggatttcagcgtttgcagatgagaacagctctcaggtaaacaataatcctccttagacacgtaaattattgttgtcgagcgtcgcgtacactgtaatccacacgtgatccagataagctctcacagagagaaaatgaaaacgaaacttaatggcagcaaactgtaaagcaacacttcacgcttgttttgccaacacaacgtggcgtctctgtggtgtaaagacggtgacactaatgaatattaatgaagttgcacaatagagcgcgctgattggtttgaaccaagcctaactcatgcattaatgcatcacactgtaagacgtaataaggctcactctggcacagacgcccagtctgcacgctggaatacaacgctattatgtcatgaccgtgacgcagcttcaaaaattcgtttcaaacaggaagtacgaatttgcttgaaataacgcaaaaacaaccaatttacactttttagtgaaatataggtgtcctaatagtgtttttagcagtgtgggacacatatacgactgtcaacagctcaaaaaatgtgttttggtgtttcgtgaccctttaaaccaaGCACACACACCGTATACTGAAAGCGTGATGTGTACCGAGCTGTGAGTGGACTGAACCGGTGCGCCCCAGGACTCCAGTAAGGGTGCTCAGTCCACCCCTGAGGTTCCAGCTTCCTCTGGCGCCGCTCTGCGATGGCTGCACAACATTGAAGCTTCACACCTTGAGTTCTGCTCATCCGCTTGTGGGTTCTCTTGACTGAAGCGCAGGCTGCAGATGCGCTGTTGGGTTTGGGGAGCAGCTGTGTGTGAGGGCAGATGGTGAAGTTGTTCTTGCTCCATTAAACTTGATTTGAGGAAATAATAATGTCACAGCCTCACCTGTCTGCATGTCTTGAGCAGCACCGCGGAGCCTTCAGGATGCGGAAACACCAGAAACAACAGTTGAAATCTTCATCCAGAAGAAGTGaagtaaaacaaaatcacaagtgTTCTGGTATGATGGAAACAGGAGTTTGGTTAACCtgtaatgatcaataataatgcAGGACTGTGCTGCTTAACATCCCTTTACATCACTCATCAAGTATTTATTGACATCTCATTAGCATAACGATCAGATGACGTGTGTGTATTTGCTGATTACAGTCCAATAAATCTAACACCCCAAGTTGTGTCACCTTCAAcaacaaaacactttttatttagtcAAAAATGTGCCAGAGGAAAATATCCTGAaaatgatgcgactgaaactgtcctacaccacgcccaccaaaaagctacccttggtagtggaaacgcaagcctgataaaggtgacccgttcCGACCCGAACTGCTCTTCAGTGAGAGCCCATCTAACCTTTCATTCACTGGTCCTCACTGGTGGAGTGATCTCCCCATTCCCACACAGACGACAGATTCACTGGTATCCAGAACACCACAACTAAACACCGCAGCATCTGTACTGAGATCACCTGAACCCTGTtgaatacccccccccccccacttcatcacacacacacacacacacacacacacacatacacacacacacacacacacacaaacacacacacacacacttcaccacACACCAACTCTAATACTGTAAAGTCCGAGCGTGCGTCTCTCAGGCTGGTTAGTTTGTAAAACGAGCAGTTCTCGTGTGTTTTGCCTCTTCTTGATAAATCATGGTGGAATGCCTCCTCCATTGTTTGTCGATTTAGACTAAAGTGTCTGTtaaatgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgctgataTTTGTTGATTAATAAACTGTCCTGTGTGCAGCTGGAGCGTGCGCTGACCCTGGAGACGCTGACGGACTGGACGCGGTCAGACATGATGGATGTGTTGGAGGTGGAGGTGTCTCTGCAGCTGCGGGTGGAGGAGTGACTGGAACTGAAGATTTCAGCGGAGTATGTGCGGGCGGAGAGCTGCTGCTGTCCACGGTGGTGCACCAGTCCTTCCTGGAGGTGAACGAGGAGGGCACGGAGGCGGCGGCCACGGCGGCGGTGATGATGACCCGCTGCCTGATGCGGGTTGAGCGCTTCTGTGCTGACCACCCATTCCTGATGCTCATCCGACACAACCCGACCGGCAGTCTGCTGTTCTACGGCCGCGTCTGCAATCCCTGAGTGCtattaaaacactgcagtccccGAGCGCTAATAAAACACTCCAGTGAA

Function

symbol description
srsf10b Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nuclear speck. Orthologous to several human genes including SRSF10 (serine and arginine rich splicing factor 10).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1415 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nuclear speck. Orthologous to several human genes including SRSF10 (serine and arginine rich splicing factor 10).

Ensembl:

ensembl_id ENSDARG00000086411 ENSDARG00000097084 ENSDARG00000097314

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023365 False 1215 mRNA 0.60 6 53427931 53434318
TCONS_00023366 False 747 mRNA 0.64 6 53428092 53434011
TCONS_00023367 False 750 nonsense_mediated_decay 0.56 5 53431272 53444454
TCONS_00023369 False 908 mRNA 0.58 5 53439606 53447683
TCONS_00024806 True 4916 lncRNA 0.48 1 53442768 53447683

Neighbor

gene id symbol gene type direction distance location
XLOC_011801 fabp10b coding upstream 1014 53425037 ~ 53426917 (+)
XLOC_011800 slc9a1b coding upstream 3058 53418445 ~ 53424873 (+)
XLOC_011799 NA coding upstream 19188 53400191 ~ 53408743 (+)
XLOC_011798 NA coding upstream 36448 53389415 ~ 53391483 (+)
XLOC_011795 CABZ01068209.1 coding upstream 63741 53356403 ~ 53364190 (+)
XLOC_011789 NA non-coding upstream 197166 53222032 ~ 53230765 (+)
XLOC_011787 NA non-coding upstream 352323 53024538 ~ 53075608 (+)
XLOC_011786 NA non-coding upstream 403733 53022431 ~ 53024198 (+)

Expression


Co-expression Network