CI01000174_00113659_00119731 (PARN)


Basic Information

Item Value
gene id CI01000174_00113659_00119731
gene name PARN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000174
NCBI id null
chromosome length 763745
location 113291 ~ 119859 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000174_00113659_00119731.mRNA
AGCCTCAGTGGGCCTCACAGCGCCTCCTGCAGGCACAGACAGGGACAGGAAGTGCGAGTGAGTGTTTCCGGCGGCCGGGGTTAAAGCTTCCAGTGTGTGTGTGTTTGTGTATTTCGCTGCTTTAGAGGATGGAGGTCACAAGACAGAATTTTAAGGAGGTTCTTCCAGAGGTGTGTAACGCGGTGCAGGAGGCGGATTTCATCTCGATAGACGGAGAGTTCACAGGAATCAGTGATGGGCCGTCAGTCAGCGCTCTGACCAATGGACTGGACACACCGGAGGAGAGATACACCAAACTGAGGAAGCACTCCATGAACTTCCTGCTCTTCCAGTTCGGCATCTGCACCTTCAGATACGACCAGAACCAGTCGACGTACATCACTAGAGCCTTCAACTTCTACATCTTCCCCAAGCCCTTCAGCCGCACGTCTCCAGACGTCAAGTTCATCTGTCAGAGCTCCAGCATTGACTTCCTGGCCAGCCAGGGCTTCGACTTCAACAAGGTCTTCCGCAGCGGGATCCCGTACCTGACGCGGGAGGAGGAGTCTCAGCTGAGGGAGCAGTATGAGGAGAGGCGCAGTCAGATGAACGGGGCGGGGCCGGTCACATACACGCCACCCTCCGGAACGGGCGTCTGCAGCGTGCCTGAGGACCAGAGAGACTTCATCAGGACCGTGGAGCAGAAGGTGGACACTCTCCTCAAGAGCTCTGATCAGACTCTGGATCTGGAGCCCTGCACCGGGTTTCAGAGGAAGCTCATCTATCAGACGCTCAACTCAAAGTTTCCAAAACTTCACGTGGAGACGCTGGAGACAGAGAAGGAAGAGCTGAACGACGCTGTGGGTTTCTCTAGGGTTGTTAGAGCCATCTCCAAATCTGGGAAGCTGGTGGTGGGTCACAACATGCTGCTGGACGTCATGCACACCATCCATCAGTTCTGCGTGACGCTGCCTGAGGTAACCGTGACGACGCGCTGGAGGATTGTGGGATTGGTGCAGCCCAAGAGAGATCACGTCCTGTACGTCACGTTCCCTAAAGAGTGGAAGACCAGTGACCTGTACCAGCTCTTCAGCGCCTTTGGTAACATCCAGGTGTCGTGGATCGATGACACGTCGGCGTTCGTGTCTCTCAGTCAGACGGAGCAGGTTCAGATAGCCATGAACACCAGCCGCTACGCCGAGAGCTACCGCATCCAGACCTACGCCGAGTACCTGCAGGCCAGGCAGAAGAACACCTGCTCCAGCAGGAAGTGGGCCTCCGACGGCTGGGCGGACACTTCCTACAGCACTGCTGCCATGGTGACCAGCCGGCTGCATGCGGTCAAGAGGAGCATCAGTCCATCTCTGGAGGAGCAGAATCATGAGGCTGACAGCAGCTGGACGACCTACAGCAGCGTCAAGAAGATCAAGACTGACGGAAGCTGCTCACAAACATATGCTGATGTCACTGGTTCTGAGGCGTCCTGTGATTGGCCCAGACTGCAGCCTGAGGGCGGAGCCTCTGCGAGCCCAGTGCAGGAGGAGGCGGAGCCTGAGGAGTCCTCGGCCAATCAGAGTCAAGGTAAAAGGAGCCGCAAACACAAGAAGAGGAAGTCAGACGCGAGAGCTCAGCAGCCAATCGGGACCCTCGCTCAGCCCAGGCGTCTCCAACAGCCAATCAGAAGACTGCACTTAACTCCTGACGCCCGGCGTGTCGTCTGTGACTTCCTGTGACCTCCTGTGACCTCTCCTTACGTGGCCGAAGTTCAGAGCGTTTTAAAGGTGCTGAAGTTACTGAGCCATTTCCTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGTATTTTACCGCGGTTTCCCAGAACGTTCCCTCATTTTAACTGTCGACGTGTCCTGCAGGTTTATTTATTCCTCGTAAGGGTTTGTTCGTCTTTAGTTCCTTCAGATTACCAGTGAGGAAGAAAAAAAAAAAAAAAAAGAAATGACGTGTCAAAGAATGTCTAATGATGTCATCACGAATGTCCTGTTCAAATCCTTGTATTTTTTTTTTTTTTTGTATGAAATGTTCAACTGTTCCCTTTTCCAGGGGAGATGAAATTAAA

Function

symbol description
parn Predicted to enable RNA binding activity; cation binding activity; and poly(A)-specific ribonuclease activity. Acts upstream of or within hemopoiesis. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01148 PARN, PNLDC1; poly(A)-specific ribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000174_00113659_00119731.mRNA True 2080 mRNA 0.54 19 113291 119859

Neighbor

gene id symbol gene type direction distance location
CI01000174_00075159_00075532 NA coding downstream 37759 75064 ~ 75532 (-)
CI01000174_00072058_00073141 THUMPD1 coding downstream 40150 71845 ~ 73141 (-)
CI01000174_00067468_00069004 NA coding downstream 43246 67365 ~ 70045 (-)
CI01000174_00051160_00054837 NA coding downstream 58454 51094 ~ 54837 (-)
CI01000174_00036845_00038179 NA coding downstream 73195 36629 ~ 40096 (-)
CI01000174_00206636_00211375 NA coding upstream 86560 206419 ~ 211561 (-)
CI01000174_00213939_00219999 NA coding upstream 93876 213735 ~ 219999 (-)
CI01000174_00364911_00370439 SOUL5L coding upstream 244407 364266 ~ 370439 (-)
CI01000174_00372791_00383900 GPR108 coding upstream 252834 372693 ~ 384141 (-)
CI01000174_00418999_00423108 NA coding upstream 299140 418999 ~ 423108 (-)
G373328 NA non-coding downstream 65556 43960 ~ 47735 (-)
G373357 NA non-coding upstream 38266 158125 ~ 160287 (-)
G373361 NA non-coding upstream 50074 169933 ~ 170268 (-)
G373362 NA non-coding upstream 50514 170373 ~ 170678 (-)
G373377 NA non-coding upstream 117804 237663 ~ 265325 (-)
G373393 NA non-coding upstream 129909 249768 ~ 253075 (-)
G373338 NA other upstream 6677 126536 ~ 128820 (-)
CI01000174_00642752_00643518 NA other upstream 522900 642719 ~ 643706 (-)
CI01000174_00741688_00755085 NA other upstream 621490 741646 ~ 755085 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018062 NA coding CM030135.1 CM030135.1 622978 ~ 637087 (+)