G373357


Basic Information

Item Value
gene id G373357
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000174
NCBI id null
chromosome length 763745
location 158125 ~ 160287 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU426404
CATCTTTCGTATGGAAATAAATAACAAGTACTCAGGCGAGGCAAGGCGCATCTCGAACAAGCCTAACATTTGTATATCGGAATGTTCTTGATCCTCCGTCCTCGTTTCCTTTCCTTGCATCCTCCCCTCACATCCCACGGGGGTGAAGTTGAAGGGCGAGGAAAGGAAGCGAGGATGCACAAATAAGAATTGTCTCATTAAAGCTGATCGTCTACAGAAGCGCGGAAATATTTAATATTTATTTTAAATTTTACATTTCCTCTTTTGTATATTTCAGATTGTAAATATTCCGTAAATTAATCTCAGCTAAAAGATGAATCCCCAGAGCTCGATATCACAATCCTGAAGAACTTGTCCACTTTTACATGCATCACATCTCCATTAAATGACCGTTAATATTTGAAGATCGAGTTTAATATGATAGTGAGGCGAATTTGTACAATAATATGACATACCAGAAGTTGATTAAATGAACTTACCATAGCGCGATACTTATGTCCAGTTTTTAAGAATTCGAAATGTGAATTTACATTCCGTAATAACATTTCCTTTTGGCTTCTTCACAAGGGTGTTTCCTCAGAATAGGCGTGCGCATAATCTTCAGGTGTCAACAACCAATAAACGATCTTTCTCCTTTTAGTTTTCTGGCTGGTTTCAGTTTGTCGTTAAATGTGTTTAGCGCCACCTGTTGTCTACTGGAGTGTGTGACATCATGACTTGTGTTACCCAGTCAGGGAGCGTTGAGGAGTAACATAAATGAAGAACGTCACGAAGGGAAAACATCGATTTGCGTTCATTGTAGGAGCAATTAGTAGTTTCTTTCGTTTACAAGCCACTATGTCAACTGCAGAGATGGGCATGAGCCAAAATCACAAACAAAATGTAAGGCAGTGTATTGTGTTGTCCACAAGATGTCGCTATACAACAAAATATATCCTAACAAAGAAAAATTAAACCAAAATACATCCCACTTCCCCATTTCCCTATATCTGTTCAAAACCAGGAGAAAATATAGGTTTTAAACAAAATAGGTACCCATTTCCTACAAGAGTGGCGTGACTCTATTTACAGATTAGGTACCTTTTAATACCGACACAATATTAGACAGAGAATTAGCAAAAATAAACAAGAAAAAAGATGGTGGGAAAAACAGTTGGAAAACACTGTTAGACATGCAACAGGCTACTTCACTTCACTTCGATCAACTTTACAACAGGCCGGAGGAACACTGTCACCAACGCGTCCTCCCAGCAGAACACATGCTCAGAGCCCCGCCTGTCTTGCATTGCGCAGAAGCGCGTTATTAAAGGATGCAACGCCAAGAGAGGAGCCAATCCGCTTTCCCAGATGATTGGCAGACGGAATCTGCAGCAATGAGGAGAGAGAAACACGAAAGGGAAAAAGAAAACATAACCACGATTCGCAGTATAACATTATAGGCTAT
>TU426405
CATCTTTCGTATGGAAATAAATAACAAGTACTCAGGCGAGGCAAGGCGCATCTCGAACAAGCCTAACATTTGTATATCGGAATGTTCTTGATCACTCGAGCGTCACTTCAAAGCGTCATCAGCTGCGCTCGAGCGATCTGCCCTCATGTTGTTAAAGTTTGGTTATTTAAAAAAATCATAATAAATATTAATAATGCAAGATGCCCCGTTGAAATATGGGAGATGCAAAGTTTAGTGCAAAAGTAAAGCATACATTTAAATTATTGTGTCAGATGTGAAGAGGGAGGAGAATGCGTGAGTCAGGTTTCTCGACGAGAAAGACTTGATACACCTGTGTATCCTCCCTCAATACTCAAACTGATGCTTCCTCGTTTCCTCGCTCCTCCGTCCTCCATCCTATGACCGAAAACCGATCGAGCTCATCCATCTTGAAGGATCTCAAATCTCTAATTGCACCGCGAGGAGGATCGAGGAGTGAGGAAGCTTCCTGAGGAGTCATGAGTGAGGATACACAGGTGTCTTTCTCGTCTAAAAACCTGACTCACGTATACATTCTCCTCCCCCTTCACAATAATTTAAACGTATGCTTTACTTTTGCAGTTTAAATAAACTTTACATCTCACATTTCACCGGGGCATCTTGCGTTATTATTATTTATTATTAATTTTTTGAATAACCAAACTTTAACAACATGAGGGCAGATCCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU426404 False 1444 lncRNA 0.40 2 158125 160287
TU426405 True 707 lncRNA 0.41 2 159558 160287

Neighbor

gene id symbol gene type direction distance location
CI01000174_00113659_00119731 PARN coding downstream 38266 113291 ~ 119859 (-)
CI01000174_00075159_00075532 NA coding downstream 82593 75064 ~ 75532 (-)
CI01000174_00072058_00073141 THUMPD1 coding downstream 84984 71845 ~ 73141 (-)
CI01000174_00067468_00069004 NA coding downstream 88080 67365 ~ 70045 (-)
CI01000174_00051160_00054837 NA coding downstream 103288 51094 ~ 54837 (-)
CI01000174_00206636_00211375 NA coding upstream 46132 206419 ~ 211561 (-)
CI01000174_00213939_00219999 NA coding upstream 53448 213735 ~ 219999 (-)
CI01000174_00364911_00370439 SOUL5L coding upstream 203979 364266 ~ 370439 (-)
CI01000174_00372791_00383900 GPR108 coding upstream 212406 372693 ~ 384141 (-)
CI01000174_00418999_00423108 NA coding upstream 258712 418999 ~ 423108 (-)
G373328 NA non-coding downstream 110390 43960 ~ 47735 (-)
G373361 NA non-coding upstream 9646 169933 ~ 170268 (-)
G373362 NA non-coding upstream 10086 170373 ~ 170678 (-)
G373377 NA non-coding upstream 77376 237663 ~ 265325 (-)
G373393 NA non-coding upstream 89481 249768 ~ 253075 (-)
G373375 NA non-coding upstream 108183 268470 ~ 272172 (-)
G373338 NA other downstream 29305 126536 ~ 128820 (-)
CI01000174_00642752_00643518 NA other upstream 482472 642719 ~ 643706 (-)
CI01000174_00741688_00755085 NA other upstream 581062 741646 ~ 755085 (-)

Expression


Co-expression Network