G373375


Basic Information

Item Value
gene id G373375
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000174
NCBI id null
chromosome length 763745
location 268470 ~ 272172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU426434
TGATTTTAAAAATGATTTTTATTAAAATTCCACAAAAAGAATACAAAGACGATCTCACAGAGCACCCTAGTATGACAATATCTGATATATGTAAGAGTATTTAAACAGACAAATTCAGAGAATACAAGAAAATGTTTGGTCCCCGCATTTAACCGTACAAACATATTTTTATAAGATAAATAAAGTAGTGTAAACACTGTTTAAATACCAAACTACAGCTCAAAATCCCAAAACATTTTGGCCTTATAAAGTAACAATGTACATATCTCTGTCAAGAAGCACTTTGATTCGCCTGTTAGTGTTTCGTAGAAACACACGAAGCTGTAATATATATATAAACACATGTACATAATGTGTTTGGATGCAGAAAATCCTTCATGTTCAACAAACCCAGACAAGAAACAGAGAGAGAGAGAGAGAGAGAAAGAGAGCAGCCAGAACCAGTGTGAGAAAGATCTAATACATGATCATAACACCAGACAGAATCATCATTTCAAGGAGTGATCTCATAGATCATTGGAAGAAAACCACATGATCCGATGAAAGAAAGGGAAGTTTTCAGGAGACCGACGGACGGATTCTCTTCGCTGCCAGTTCTTCCACTGCAAACGTGTAGTTATACTGCAGAGAAACAATCTGTCATTCAAATCTGCTCAACCACACAGAAATAAAGCAATACAAAAGCAGATTTCAAAATAAAAGTCACCCACATTGTTTCAAAATCATGTCTTACAACTGTACAACGATAATAATTTCTCATACAGTTAGAATCAGAATGATAACAGCAATAAAAACGGATCTCACCTCATTCTCAATGTCCTGCACGGATTTGATTCGGATGTCACTCAATGTGCTCACAGACACCTGACGGACACACATCACAGTTCAGCAAGGCTGTTAGTGGTCACTGCCACTGAACACTTCATTGTGATTGGTTAATGGTTGATTTTGATGATTAACTAGCAACTTTGAAGCCTCTCTTTTTCCTCACATAATAAAATCATTTACACTCATATCAATATTTCATCATGTAGTAAGTCAGATGTACTTCACACCCTGATCGCCCGGTCATAATGACCAGATGAATGCATGTTAATGAGTGACGCAGTGACCTCTGACCTTTGTGTTTGACTGAGAATCAAACTTGGGGTGTAGAGTGAAAGGAACACCATCCATCGCTGAGAAGAAACATAAACAACAGCGAGTCACATGTTTTCACTCATATCACATGTGAAGAGGTCACATGTCAGTCTTCTGTTTACATAATTATTTACAAATGATGATAACTAACATTACAAGTGACTTCAAGAAAAATAGAATTATGTGTATATGATGATATATACAGGAAAGAGATGAAATGATGATGAGGTTAGTTTGTCTGCTGCTGTACCTGTGATACCATAGATGTTGCTATGGTTACCGCTGTCATACACTCCCTCCGTCAGGTTGGTCATGTCAAGCTTACTGCGCCGACGGCTGAATTTCGGTGGGACATCAGGAGGGTTGCTATGGAAACAGACAGTCAGAGGGAGAAAACCACAAAGCAATGCTCTAGCTGCAACCCCAAACACCCTGAAACCCACATAGCAACACCTTAGCAACCACCCGGAACACCTCAGAAATCCATAAATCAATGCCCTAGCCACAACCTTAAACATCCTAAAACCCACATAGCAACACCTTAGCAACCACCCAAAACACTATANAAACCACATAGCAACGCCCTATCAATCACCCCAAAGAAACCCACATAGCAACACCCTAGCAACCACCTGGAACACCTTAGAAGCCACATATAAATGCCCTAGCCACAACCTTAAACATCCTAAAACCCACATAGCAACACCCTAGCAACCACCCAAAACACTCTAGAAACAACATATCAATGCCCTAGCAACAACCCTAAATATCCTAAAACCCACATAGCAACACCCTAGCAACCACCCGGAACACCTTAGAAACCATAAATCAATGCCCTAGCCACAACCCTAAACATCCTAAAACCCACATAAAAACACCCTAGCAACCATCCAAAACACTCTAGAAACCACATAGTAACGCCCTATCAATCACCCCAAACAAACCCACATAGCAACACCCTAGCAACCACCCGGAACCCCCTAAGGCTTGCAGGTTGTCAGTCAGCACTAGTCTACAGTGAGATCAAACACTGAAGCGCTGAAGATGCTGTGTCCAGTGATGTTTTGACTGAATGTGCTGCTCTCCATTTACAGCTGATTTGCATCGGTCTAATTTAGCAGTCAAATGATCCAAACGCTGGAGTCTGTTTGTGACGCGTGAGACTGTAGATTTGGCTTCAGTGCTCTCACTATCTGCTCCCATCATGCTAATGTTGTGTGAGGGCGTACCTGGGTTTGAGAGGCAGCGGGGGTCCGGCTCCGTCCAGAGACAGACTTCGCATGTCCAGACTGACACTGCGAGGCTTGGCCTGAGGCGTCGGGGTGGAGAACGGGCCCTTCAGACACCACACCACAAAGCCATTCATGTCCCTGTGACACAGACACTGCAGATGAACACAGCCCAGAGCCTCTGACTCCAGAACCAGAGCGTAAGAACCAGTGTACAGAGAGTCTAACTCCAGAACCAGAGTACTGACTGGAGAAACGCTGAACAGTGTGGCGTAGAGGTGTTAAGCCGAAACAAAGAAGAGGGATTTTTAAAGTCCCCCTGTGGTAAAAATCAACTTTTATATAATGTTGTTTATATGTCTATGTGGTGTTTTTAATATACTTTCAGACAAACCATGAGCAAATTCATCAGTCAACACCATTTCTGAGTATTTTCTCTTTAAAACTGCAGTGATCTAAAGACAGTTTCAAAAACACGGTTTGAAATCTCTGGTGTTTCTGACG
>TU426437
TGATTTTAAAAATGATTTTTATTAAAATTCCACAAAAAGAATACAAAGACGATCTCACAGAGCACCCTAGTATGACAATATCTGATATATGTAAGAGTATTTAAACAGACAAATTCAGAGAATACAAGAAAATGTTTGGTCCCCGCATTTAACCGTACAAACATATTTTTATAAGATAAATAAAGTAGTGTAAACACTGTTTAAATACCAAACTACAGCTCAAAATCCCAAAACATTTTGGCCTTATAAAGTAACAATGTACATATCTCTGTCAAGAAGCACTTTGATTCGCCTGTTAGTGTTTCGTAGAAACACACGAAGCTGTAATATATATATAAACACATGTACATAATGTGTTTGGATGCAGAAAATCCTTCATGTTCAACAAACCCAGACAAGAAACAGAGAGAGAGAGAGAGAGAGAAAGAGAGCAGCCAGAACCAGTGTGAGAAAGATCTAATACATGATCATAACACCAGACAGAATCATCATTTCAAGGAGTGATCTCATAGATCATTGGAAGAAAACCACATGATCCGATGAAAGAAAGGGAAGTTTTCAGGAGACCGACGGACGGATTCTCTTCGCTGCCAGTTCTTCCACTGCAAACGTGTAGTTATACTGCAGAGAAACAATCTGTCATTCAAATCTGCTCAACCACACAGAAATAAAGCAATACAAAAGCAGATTTCAAAATAAAAGTCACCCACATTGTTTCAAAATCATGTCTTACAACTGTACAACGATAATAATTTCTCATACAGTTAGAATCAGAATGATAACAGCAATAAAAACGGATCTCACCTCATTCTCAATGTCCTGCACGGATTTGATTCGGATGTCACTCAATGTGCTCACAGACACCTGACGGACACACATCACAGTTCAGCAAGGCTGTTAGTGGTCACTGCCACTGAACACTTCATTGTGATTGGTTAATGGTTGATTTTGATGATTAACTAGCAACTTTGAAGCCTCTCTTTTTCCTCACATAATAAAATCATTTACACTCATATCAATATTTCATCATGTAGTAAGTCAGATGTACTTCACACCCTGATCGCCCGGTCATAATGACCAGATGAATGCATGTTAATGAGTGACGCAGTGACCTCTGACCTTTGTGTTTGACTGAGAATCAAACTTGGGGTGTAGAGTGAAAGGAACACCATCCATCGCTGAGAAGAAACATAAACAACAGCGAGTCACATGTTTTCACTCATATCACATGTGAAGAGGTCACATGTCAGTCTTCTGTTTACATAATTATTTACAAATGATGATAACTAACATTACAAGTGACTTCAAGAAAAATAGAATTATGTGTATATGATGATATATACAGGAAAGAGATGAAATGATGATGAGGTTAGTTTGTCTGCTGCTGTACCTGTGATACCATAGATGTTGCTATGGTTACCGCTGTCATACACTCCCTCCGTCAGGTTGGTCATGTCAAGCTTACTGCGCCGACGGCTGAATTTCGGTGGGACATCAGGAGGGTTGCTATGGAAACAGACAGTCAGAGGGAGAAAACCACAAAGCAATGCTCTAGCTGCAACCCCAAACACCCTGAAACCCACATAGCAACACCTTAGCAACCACCCGGAACACCTCAGAAATCCATAAATCAATGCCCTAGCCACAACCTTAAACATCCTAAAACCCACATAGCAACACCNTAGCAACCACCCAAAACACACTAGAAACCACATAGCAACGCCCTATCAATCACCCCAAAGAAACCCACATAGCAACACCCTAGCAACCACCTGGAACACCTTAGAAGCCACATATAAATGCCCTAGCCACAACCTTAAACATCCTAAAACCCACATAGCAACACCCTAGCAACCACCCAAAACACTCTAGAAACAACATATCAATGCCCTAGCAACAACCCTAAATATCCTAAAACCCACATAGCAACACCCTAGCAACCACCCGGAACACCTTAGAAACCATAAATCAATGCCCTAGCCACAACCCTAAACATCCTAAAACCCACATAAAAACACCCTAGCAACCATCCAAAACACTCTAGAAACCACATAGTAACGCCCTATCAATCACCCCAAACAAACCCACATAGCAACACCCTAGCAACCACCCGGAACCCCCTAAGGCTTGCAGGTTGTCAGTCAGCACTAGTCTACAGTGAGATCAAACACTGAAGCGCTGAAGATGCTGTGTCCAGTGATGTTTTGACTGAATGTGCTGCTCTCCATTTACAGCTGATTTGCATCGGTCTAATTTAGCAGTCAAATGATCCAAACGCTGGAGTCTGTTTGTGACGCGTGAGACTGTAGATTTGGCTTCAGTGCTCTCACTATCTGCTCCCATCATGCTAATGTTGTGTGAGGGCGTACCTGGGTTTGAGAGGCAGCGGGGGTCCGGCTCCGTCCAGAGACAGACTTCGCATGTCCAGACTGACACTGCGAGGCTTGGCCTGAGGCGTCGGGGTGGAGAACGGGCCCTTCAGACACCACACCACAAAGCCATTCATGTCCCTGTGACACAGACACTGCAGATGAACACAGCCCAGAGCCTCTGACTCCAGAACCAGAGCGTAAGAACCAGTGTACAGAGAGTCTAACTCCAGAACCAGAGTACTGACTGGAGAAACGCTGAACAGTGTGGCGTAGAGGTGTTAAGCCGAAACAAAGAAGAGGGATTTTTAAAGTCCCCCTGTGGTAAAAATCAACTTTTATATAATGTTGTTTATATGTCTATGTGGTGTTTTTAATATACTTTCAGACAAACCATGAGCAAATTCATCAGTCAACACCATTTCTGAGTATTTTCTCTTTAAAACTGCAGTGATCTAAAGACAGTTTCAAAAACACGGTTTGAAATCTCTGGTGTTTCTGACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU426434 False 2873 lncRNA 0.42 2 268470 272172
TU426437 True 2873 lncRNA 0.42 2 268470 272172

Neighbor

gene id symbol gene type direction distance location
CI01000174_00213939_00219999 NA coding downstream 48471 213735 ~ 219999 (-)
CI01000174_00206636_00211375 NA coding downstream 56909 206419 ~ 211561 (-)
CI01000174_00113659_00119731 PARN coding downstream 148611 113291 ~ 119859 (-)
CI01000174_00075159_00075532 NA coding downstream 192938 75064 ~ 75532 (-)
CI01000174_00072058_00073141 THUMPD1 coding downstream 195329 71845 ~ 73141 (-)
CI01000174_00364911_00370439 SOUL5L coding upstream 92094 364266 ~ 370439 (-)
CI01000174_00372791_00383900 GPR108 coding upstream 100521 372693 ~ 384141 (-)
CI01000174_00418999_00423108 NA coding upstream 146827 418999 ~ 423108 (-)
CI01000174_00433771_00444896 NA coding upstream 161599 433771 ~ 444896 (-)
CI01000174_00445544_00465033 VAV1 coding upstream 173066 445238 ~ 465554 (-)
G373377 NA non-coding downstream 3145 237663 ~ 265325 (-)
G373393 NA non-coding downstream 15395 249768 ~ 253075 (-)
G373362 NA non-coding downstream 97792 170373 ~ 170678 (-)
G373361 NA non-coding downstream 98202 169933 ~ 170268 (-)
G373344 NA non-coding downstream 100801 81069 ~ 167669 (-)
G373372 NA non-coding upstream 2119 274291 ~ 275903 (-)
G373395 NA non-coding upstream 14206 286378 ~ 286661 (-)
G373396 NA non-coding upstream 14930 287102 ~ 287375 (-)
G373397 NA non-coding upstream 16442 288614 ~ 288920 (-)
G373398 NA non-coding upstream 17654 289826 ~ 290042 (-)
G373338 NA other downstream 139650 126536 ~ 128820 (-)
CI01000174_00642752_00643518 NA other upstream 370587 642719 ~ 643706 (-)
CI01000174_00741688_00755085 NA other upstream 469177 741646 ~ 755085 (-)

Expression


Co-expression Network