Gene
RNA
| Item | Value |
|---|---|
| gene id | G373480 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000174 |
| NCBI id | null |
| chromosome length | 763745 |
| location | 586957 ~ 587336 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU426563 | True | 380 | lncRNA | 0.30 | 1 | 586957 | 587336 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000174_00445544_00465033 | VAV1 | coding | downstream | 121403 | 445238 ~ 465554 (-) |
| CI01000174_00433771_00444896 | NA | coding | downstream | 142061 | 433771 ~ 444896 (-) |
| CI01000174_00418999_00423108 | NA | coding | downstream | 163849 | 418999 ~ 423108 (-) |
| CI01000174_00372791_00383900 | GPR108 | coding | downstream | 202816 | 372693 ~ 384141 (-) |
| CI01000174_00364911_00370439 | SOUL5L | coding | downstream | 216518 | 364266 ~ 370439 (-) |
| CI01000174_00642752_00643518 | NA | coding | upstream | 55383 | 642719 ~ 643706 (-) |
| CI01000174_00666708_00668270 | NA | coding | upstream | 78570 | 665906 ~ 668341 (-) |
| CI01000174_00685987_00708724 | NA | coding | upstream | 98521 | 685857 ~ 708960 (-) |
| CI01000174_00741688_00755085 | NA | coding | upstream | 154310 | 741646 ~ 755085 (-) |
| G373472 | NA | non-coding | downstream | 1713 | 584595 ~ 585244 (-) |
| G373446 | NA | non-coding | downstream | 73686 | 508821 ~ 513271 (-) |
| G373433 | NA | non-coding | downstream | 177371 | 409324 ~ 409586 (-) |
| G373430 | NA | non-coding | downstream | 185142 | 401485 ~ 401815 (-) |
| G373427 | NA | non-coding | downstream | 197087 | 389567 ~ 389870 (-) |
| G373487 | NA | non-coding | upstream | 14848 | 602184 ~ 602477 (-) |
| G373490 | NA | non-coding | upstream | 21018 | 608354 ~ 608632 (-) |
| G373478 | NA | non-coding | upstream | 35753 | 623089 ~ 624104 (-) |
| G373463 | NA | non-coding | upstream | 47993 | 635329 ~ 637599 (-) |
| G373469 | NA | non-coding | upstream | 66821 | 654157 ~ 654425 (-) |
| G373338 | NA | other | downstream | 458137 | 126536 ~ 128820 (-) |
