G373775


Basic Information

Item Value
gene id G373775
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000177
NCBI id null
chromosome length 204033
location 106764 ~ 110993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU426980
TTTGCTGAGATACTGGAAGTAATACATGTAGCAGCCAGTGGTTGGATCTTGTGCATATAAAGCCTCCCTTTTTTTGGCGTCTGTTATCTGTAGCAGATCTCCATGGTACTCCACTACATACTGCCCTTTCTGGAACTTCTGTGTGGCAAAAACTCCCCTGCCCTTTCCTTCAATGTACCTGACCATCATTCCATTCTCAATCCCGTTTGTGATCAGCATGTCTATGTGCCTCTTCTCTTCACACTTCAGTTCGCTTTTGCTTTTTCTGGAGCTTCTTCTGATGGGATAATAATCTGTAACCTTTCGGCACTGAGAGCTCTTGGTATCAGCAATTCTCTGTGTGGATCTCTTTACTTTAAGTTTACGAGGGGGTCGTTTCCTATGATTGGGGGAAGTGATGTCACTGCTGGCGTGGATGTATGACGCAGTGCAGTGCAGTTGACGCGTCTGCTCCTCTGCTCTGTGCACCGAGTGCTGCAGCTCTTCATTCACAGCCATTTTTGGGAGGATGAACTCACCATTTACAGTACTGCCTCTCCTGGAATCTCCATGCTTCTGTGGCTCATTTTGCGTGCAGAATAATCGTGAAGTTTTCCCGTCCTGGATGAGTTTGACGGAGATAGCTTCATGATGCTGTGATTTCGAGCTGCTGTGCTTCAAGAGACGGTGAAATGGAGAGTGTCCGTTGCATATGACGTCCCCGTTCATTTCAGTCCACTTTCTCTTCGAGCCTTATTGTTTCGAGACGATGGTCCAGTCCGGTCCAGTGTTTTCTCCTCTACACTTCTGTCCTTCTAAACGGCGGGGAACGAGGACATTCAAAAACAGCTCCGTGTTCACGAAAGAAAAAAAAAACAAGAAACTTTCGAGCTGTTTTAATTAATGCTCCTCCATCCGAGCTAGTTTGTACAGTTTCACGCCGCCATGTTTGCACTTTTATCTCATTCACGGGAGGAAACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU426980 True 961 TUCP 0.46 6 106764 110993

Neighbor

gene id symbol gene type direction distance location
CI01000177_00081319_00089885 RILPL1 coding upstream 16879 81319 ~ 89885 (+)
CI01000177_00061966_00080120 NA coding upstream 26644 61966 ~ 80120 (+)
CI01000177_00050469_00056013 NA coding upstream 50582 50469 ~ 56182 (+)
CI01000177_00119283_00126859 SBNO1 coding downstream 8290 119283 ~ 126859 (+)
CI01000177_00133004_00135222 CDK2AP1 coding downstream 22011 132908 ~ 135890 (+)
CI01000177_00156585_00162274 NA coding downstream 45592 156585 ~ 162274 (+)
CI01000177_00184252_00189231 NA coding downstream 73077 184070 ~ 189619 (+)
CI01000177_00198200_00203950 PITPNM2 coding downstream 87207 198200 ~ 203950 (+)
G373782 NA non-coding upstream 37912 17574 ~ 68852 (+)

Expression


Co-expression Network