CI01000186_00165206_00167364 (PPARDB, PPARD, PPARB, PPARDA)


Basic Information

Item Value
gene id CI01000186_00165206_00167364
gene name PPARDB, PPARD, PPARB, PPARDA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 165042 ~ 167459 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00165206_00167364.mRNA
ATTAGCATAATGTCATAAATATTGCAGAAATTAATTATGACACAGTTCTGTGACGTGTTTGTCTCTCGCAGATGCTGTTATGACCGTGGCGGCTCATGAGCGTGTTTGAAATTCTGGAGATGGATGGAAGAGACTCGGCGGTTGTGACTGTGAGGAGCAGATTACCCAAAGATCCAGGGGCAGTGGGTGGAGTCAGTGAGTGTATGGCGAGCGAAGACTCCTCCCCCTGCATTAGCCAGGGGGAGGGGCCAGATTACGAGCAACTTGAGGATGTGCTTTGTGAGCTTGGAGCGGGGGCGGAGCTTAACCTGGAGCTGGATGTGAGGGTGGAGCCTCAGAAAGCCGAGATTCTGCAGGGGGAGGAGCTTAGCTGGGAGACGAACCGAAAGGAGGCGAACGAACTGGAAGAGCACAGCAACACGAGCCGCAGTACAGCCAGTCCTGAACCTACAGCAGCCTCCACAGATCTCTGCAAAGCGTCGCCTCTGTCAGAGCAGCTCCTGCAGGGCCGTGAGGAGGGGGCGGGGCTAAACATGGAGTGTCGTATCTGTGGAGACAGAGCGTCGGGATTCCACTACGGCGTTCATGCCTGTGAGGGCTGCAAGGGATTCTTCCGGAGGACCATTCGAATGAAGTTGGAATATGAGAAATGTGACCGCAGCTGTAAGATCCAAAAGAAAAGTCGGAATAAATGCCAGTTCTGTCGATTTCAGAAGTGCCTGATGCTCGGGATGTCCCATGACGCGATCCGATACGGACGGATGCCGGAGGCAGAGAAGCGTAAGCTAGTCGCGGGTCTGTTAGCGGGGGAAAAGAGCTCTCAGACCTCCAGCGGTTCAGATCTGAAGTCTCTCGCCAAACGGGTCAACAACGCCTACCTGAAGAATCTGAACATGACCAAGAAGAAAGCTCGCAACATCCTGACGGGGAAGACCAACGCAAGCCCGCCATTTGTCATTCATGACATGGACTCGCTGTGGCAGGCGGAAAACGGACTGGTCTGGAATCAGGTGATTAACGGAGCTCCGCCCAATAAGGAGATTGGCGTGCATGTGTTTTACCGCTGTCAATGTACAACCGTGGAAACCGTACGAGAACTCACAGAGTTTGCCAAAAGCATCCCGGGATTCATTGACCTTTTCTTGAATGACCAGGTGACGCTGTTGAAATACGGTGTCCACGAGGCGATCTTCGCCATGCTGCCATCGCTCATGAATAAGGACGGGCTGTTGGTGGCGAATGGGCGGGGCTTCGTGACGAGAGAGTTCCTCCGCAGTCTTCGCAAACCCTTCAGCGAGATCATGGAGCCGAAGTTTGAGTTTGCGGTGAAGTTTAACGCTCTCGAACTGGACGACAGCGACCTCGCCCTGTTTGTGGCTGCCATTATCCTGTGTGGAGATCGTCCAGGACTCATGAACGTCCACCAGGTGGAGGAGATCCAGGACAGCATCCTCCAGGCCCTCAATCAGCACTTGCAGCTCAATCATCCCGACGCCGGCTTTATCTTCCCCAAACTGCTGCAGAAGCTCGCAGACCTGCGGCAGCTGGTGACGGAGAACGCGCAGCTGGTGCAGAAGATCAAGAAGACTGAGTCGGAGACGTCGCTGCACCCGCTGCTACAGGAGATCTACAGGGACATGTACTGACCCAAACCATTGAAGGCACGCGGACCAATCACTGTGACCTACTGCTATTTTTATAAAACACTTTGGATTTTATGCGACTGGATGATATGTTACTGATGAAATGCGAACTGAACTCTGAACCAGACCGGCCAATGAGATTGTGCAGGTCGAAGAGACGCAATAAA

Function

symbol description
ppardb Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and nuclear receptor activity. Predicted to be involved in several processes, including negative regulation of cholesterol storage; positive regulation of fatty acid metabolic process; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; intestine; liver; and ovary. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PPARD (peroxisome proliferator activated receptor delta).
pparda Enables sequence-specific DNA binding activity. Acts upstream of or within neural crest cell development and response to activity. Located in chromatin. Is expressed in several structures, including intestine; liver; ovary; pectoral fin; and pharyngeal arch. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PPARD (peroxisome proliferator activated receptor delta).
ppard Enables several functions, including linoleic acid binding activity; nuclear receptor activity; and transcription coactivator binding activity. Involved in apoptotic signaling pathway and positive regulation of transcription, DNA-templated. Predicted to be located in chromatin. Implicated in type 2 diabetes mellitus. Biomarker of biliary tract cancer and pancreatic cancer.

NR:

description
peroxisome proliferator-activated receptor beta 2, partial

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K04504 NR1C2, PPARD; peroxisome proliferator-activated receptor delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00165206_00167364.mRNA True 1810 mRNA 0.53 7 165042 167459

Neighbor

gene id symbol gene type direction distance location
CI01000186_00156270_00161766 NA coding downstream 3276 156183 ~ 161766 (-)
CI01000186_00144110_00151887 CAMK1GA coding downstream 13155 143662 ~ 151887 (-)
CI01000186_00095947_00097088 CEP19 coding downstream 67900 95645 ~ 97142 (-)
CI01000186_00087531_00090364 NA coding downstream 74551 87493 ~ 90491 (-)
CI01000186_00039365_00051758 HRH4 coding downstream 112556 39303 ~ 52486 (-)
CI01000186_00175457_00185420 NA coding upstream 7740 175199 ~ 185420 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding upstream 47940 215399 ~ 223764 (-)
CI01000186_00238503_00238674 NA coding upstream 71011 237138 ~ 238674 (-)
CI01000186_00240507_00248051 DENND2DB coding upstream 72870 240329 ~ 248084 (-)
CI01000186_00259516_00260745 NA coding upstream 91957 259416 ~ 261189 (-)
G378456 NA non-coding downstream 44874 119741 ~ 120168 (-)
G378457 NA non-coding downstream 46723 117796 ~ 118319 (-)
G378455 NA non-coding downstream 48172 114368 ~ 116870 (-)
G378454 NA non-coding downstream 52155 112664 ~ 112887 (-)
G378453 NA non-coding downstream 53546 111292 ~ 111496 (-)
G378476 NA non-coding upstream 48323 215782 ~ 216043 (-)
G378399 NA non-coding upstream 69679 240855 ~ 241071 (-)
G378480 NA non-coding upstream 133427 300886 ~ 301234 (-)
G378481 NA non-coding upstream 134752 302211 ~ 302489 (-)
G378482 NA non-coding upstream 155070 322529 ~ 322781 (-)
G378458 NA other downstream 43617 120682 ~ 121425 (-)
G378466 NA other upstream 24711 192170 ~ 193760 (-)
CI01000186_00360860_00361637 NA other upstream 193451 360640 ~ 366991 (-)
G378509 NA other upstream 228799 396258 ~ 396755 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location