CI01000186_00175457_00185420


Basic Information

Item Value
gene id CI01000186_00175457_00185420
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 175199 ~ 185420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00175457_00185420.mRNA
GTCTGCAGACAGGAGGCGCCAGAGTTCAGCAAATGCTGGCAGGATGTGGACAGACTTGCAGAGAGAATGAAGGAAAGGAGAAATAAGAAAGTAAAATCATCAGGTGTGAGACATGGCGCTGAGAGCCGCTCTGCTGAAGAGTATCTGGTTTTGTCTCATAACCTTCACAGTGTTTTGCGGATTCCTCACGATCCGGCGGCCCTCGAGAGACACTTCAGCGATGATGATGACGGTCCCGTGTCCAGTCAGGGGTACATGCCCTACCTGAACCAGTTCATACTGGACAAGGTGACGGAGGGGACGTTCGTTAAAGAGGAAGTCGATGAGCTGTGCTGGACTCTGTGTTCCAAGAAGAACTACCGTCCCAACACGCTCCGGGTTCTGACCAATCAGGATGCTCTGCGGCTCTGGTGTCTCTTCAACTTCCTGGCGGATGACAAATACCCTCTCGCTCTCGTGCCAGAGGAGCCGGCATTTCAGTGTTTACGACGAAGGCTGCTGGCTGAGGAGGAGGAGAAGGTGAAGTCTCTGCTGAGTCTGCAGGAGGATCAGGAAGAGCAGCTCCTGCAGACCCAGCGCGAGAAGCAGGAGCTCGAGCAGGAGATGGAGAGGAAGTCTCAGGCTCTGGACGAGGCCCAGCGGCAACTGGAAAAAGTGCGGGCCAGTCGACGCAGAGTGGACCAGGACATCGCGGCCGCTCAACGTAAACTTCGTCAGGCCAGCACGAGCGTTAAACACTGGAACGTTCAGATGAACCGCCTGATGCATCCCATCGGCCCTGGAGAAAGGAGAGCATCCTCCAGTAATCTTCTCGCCCCTCCAGTCCGCATCCCCTCTGTCAGCGAGACCGAATCGAGACCTCCACAGAAAGACAAACAGAATAGCCTTGACTGTGAAGACAACAGCGGCAGCGAGAATATGGACTGCTGCAACAATGAAAACACAGAGCCGACTGACGCTGAATAAACCTGACATAACAGTGATAAACCTGACTGAAATGTCCTGAAATAGCAAACTAAACTGACTGTGAATGAATCAGAGCAGCTGTAATCATGACTGAAATATACATGTTTTGTTGTTGTTCTTGTCTGATAGACCTAGGCTGTTTTTTTTTTTTTTTGTGAAACTTGTGGTTTTACTTCCTGTTTCCTGTGTCAGCAGAAGATGCTGTGCTTGTGTAGAACTGCTCTTTATCTCTCGTTCACTGTCTTGAAAGAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00175457_00185420.mRNA True 1224 mRNA 0.51 7 175199 185420

Neighbor

gene id symbol gene type direction distance location
CI01000186_00165206_00167364 PPARDB, PPARD, PPARB, PPARDA coding downstream 7740 165042 ~ 167459 (-)
CI01000186_00156270_00161766 NA coding downstream 13433 156183 ~ 161766 (-)
CI01000186_00144110_00151887 CAMK1GA coding downstream 23312 143662 ~ 151887 (-)
CI01000186_00095947_00097088 CEP19 coding downstream 78057 95645 ~ 97142 (-)
CI01000186_00087531_00090364 NA coding downstream 84708 87493 ~ 90491 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding upstream 29979 215399 ~ 223764 (-)
CI01000186_00238503_00238674 NA coding upstream 53050 237138 ~ 238674 (-)
CI01000186_00240507_00248051 DENND2DB coding upstream 54909 240329 ~ 248084 (-)
CI01000186_00259516_00260745 NA coding upstream 73996 259416 ~ 261189 (-)
CI01000186_00261713_00270433 CRY1BB coding upstream 76003 261423 ~ 270510 (-)
G378456 NA non-coding downstream 55031 119741 ~ 120168 (-)
G378457 NA non-coding downstream 56880 117796 ~ 118319 (-)
G378455 NA non-coding downstream 58329 114368 ~ 116870 (-)
G378454 NA non-coding downstream 62312 112664 ~ 112887 (-)
G378453 NA non-coding downstream 63703 111292 ~ 111496 (-)
G378476 NA non-coding upstream 30362 215782 ~ 216043 (-)
G378399 NA non-coding upstream 51718 240855 ~ 241071 (-)
G378480 NA non-coding upstream 115466 300886 ~ 301234 (-)
G378481 NA non-coding upstream 116791 302211 ~ 302489 (-)
G378482 NA non-coding upstream 137109 322529 ~ 322781 (-)
G378458 NA other downstream 53774 120682 ~ 121425 (-)
G378466 NA other upstream 6750 192170 ~ 193760 (-)
CI01000186_00360860_00361637 NA other upstream 175490 360640 ~ 366991 (-)
G378509 NA other upstream 210838 396258 ~ 396755 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019928 def6b coding NC_007133.7 CM002906.2 978867 ~ 996521 (+)