CI01000186_00281889_00289711


Basic Information

Item Value
gene id CI01000186_00281889_00289711
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 280912 ~ 290480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00281889_00289711.mRNA
TGCTTCTCAGAGGTTTCTCCTGAGAAAATCAGGCAAATCTGTGCTCAGTTTGAGAAAGTCTGATATGAACTCAACTACATTTTGATCTGAGCTGCCATTAACATGTAATGTTTGTCCTAAAAGTCCTTTGAATAAATCAAGAATCAGAACTGGTGGTTGCCAGGGAGTTGCTATGTGAGTGTTTATTCTTGGCGTTTTATGGTCCAGCAGGTGAAAATGGTGAAGTACCAGCACACCTCTCTCTCCTCAACAACAACAACACATGATTTGAGGATGACACGCATTCTCAACTTCAATACTAGAACTAGTGATGAGTGAGTTAATTAATTCTTCTCATTAATTGAATGCATATTTATGTCTTCACAGCTCTGGAATCTGATCGAATGATGGAGACGAGCGTCAAACGAGGGTAGACCCCTGCCAGCCAATCAGCTCTCGCTCTCGGCCGACAGGCGCAGCTGCCTGACCAATCACAGCAGGGATGTGCCAGAGGTGGGCGGGGCCTGAGTGCTGGAGTGGCAGTGTTCTGGATCGAGCGTTCAGAGAGAGAGAGAGAGAGAGAGGAGAGACAGCTCCGTCCGTCCGATTCTGCTGCGTGTCTCTCTCACTGCAGCTCTGCATGGGAGTGTGTGTGTGTGAGCGTATATGTGTGTGTGTTCATGTATGCCGGCAGTAGCTGCATCGCTCCTTCATCCTCTTCATCTTCATCCTGTGTTCGGAGTGAATTCACAGCATTGGCGCACGATCCTGCTCATCTGTTGCCGTGGTGATGGGCTGTCGACTGTCAGGGCCGTGGATGGGCGACGGGATGGGGGTTCACGGTCGGGATTTGACCCACCTGCCGAAGCGAGAGGCCTTCCGTATCCTGGCCAGCTATGAGCAGCCAATCACGCTTCAGATCGAGGGCCGGGGGCGGAGCCTGCAGTACAACCGGACAACGGACTGCAGCACGCAGACGGAACGGCCGTGGGACCCTCTCCGGCCGCACTCGTGTACAATGCCGCGTCTGCCTCCCTCGGACAGGACAAGCATCACTATTACTATAATTCTAAACTACCCATTACTATTAATATTACTATTTATGTATATTTCATATAACCGCCATACTCTTTGTAGGCATCTTTACGCTGCTGTTGGTCTCTATATCAGAATGAGGACGTACTACAATCACATGACCCTACCCGTGAACCGTAGAGATGGAGGCAGGTACGAGTACCTGCCAAACACACCTAGAGACCTGGAGCACAGAGAACGCCTGTCCTACAATGAGCCGGAGTTCTCCAGCGGCGTGTCTCAGGGACAAAACTGTCTGATCGGCTGCTGCAAAACCAACTTAGAGGAGCCCAGAAGTTTCCAGAGTCAGCCTGAGAGGCGAGGAGTCACATATTATACTGATGACGATGATTATATGATGGAGAAACCCCTGGGTTACCTGCCTCTTCACCATGAGCTGGACAGTGGACTCGGCTGGACAGACGGTAGTTTCCACCAGGGGGAGCTGTCGGGGGTGGAGACGGAGGAGGGGCTCGAGGAGTGCCACGGCCACGGTGGCGGAGGGTCGCCATCGTCGGAGTCCTTCATCTCGTCGGAATTGAGCGACTCTGGTTTTTACAGCGTCAGCACCGGCGAGTTCCTGCGCTTCCAGCGTCTACTTGAGAAGCGCATGCGCCATTACAACGCTCGCATGCACCACCAGGGGGAGCCGTGTTCCCGCGAGCGGCGGGACAGCCAGATAAAACACCCTCTAGAGGCCATCCCGGAAACGCTGACAGTCCAGCCTCAAAACGTTTGCTTGCCCGTCCCGGGGTCGCGAGGATTGTCCCGGGTGTCGTCCGTGCAGTACCGCAAGGCTGAGCGGCCGTGTTTGAACAGACACAGCTCCAGCAGCGGCTCGCTGTTCAATCCCGCAGTGCACTCCACATGCAGTACCCCCTCCGGCCAGAGGCGGCCACTGCCTCATCCGAGTTCTGCAGGAATGCTGAGGAGGAGCCGAACGCTGCATCACCGTCCTGCGCCCATGGAGTACCGCAGACGGGCGAGTCACCCGGCTTCGCCCAACTACTGCAGCGCCACGTTGCATCCCTGCAGCCACAGAGCCGACCTGCCCACAAATCTCCCCGAGGAGCCAGACTTGGCACTGATGCATGCCGTCAGTCACCCAGCACACCCTTCCGCACACTCTGCGTTTCCTACACAGACTGCACACGCTATGCATGCGATGAGTCAACCATCCCTGATCACTCCAGTTGATGAGCGCTGCTATATGCCGCCAGATCTTCATGACAACAGTAGGATCCGAGCATCCACCGAACCCCAGAGATTCGTGATGGAGCAGCCGCCCAGCCAGCACAGGGACGTGCGGTTCCACACCCTAAGTCACACGCCCAGTCAGGACGCCAATGACACCTGGCCGAAACCCGCCAACCGCGGAGGCTCAGGTGGAGGAGGCGGACTCTACAGCACCTTGGAGGGCCACATGCCCACTGCGGCCACTAGGAAAACACCCAGCGGGAACTTGCGGGCCATGCGAAATCAGATGCTGCGGGATAGAGCGTCCCGGCTGGCGGACGAGCGTAGCGGCATGAGCACAGACGAGGAGAGTCACAGCGAGGTCCGCATGGGTCGCTATTGGAGCCGCACTGAGCGACGCGAACACATGCTACAGAGACAGCGACAGCAGCAGGCCAGAGGTGGTGTGGCTGCGACGGGATTGGTGCATGGCGGCGGGGTCGTGGGAGGAGCCAACGTAGACACTTATAGTACGGTCCTCGAGCTGAGCCAGAGGAAACTAAGTCGTCTGAGGAACCGGAAGCTGCTGGATGACTGGACCACCGTAGAGGAACTCCTGACGCACGGAACGCGCCTGAGCTCCAGCGAAGACGCCTTGCAGCTGCCCACGTCGTTGCTAACCGTCACAACTGTATAGCGACACCCACTGCGTGTGTGTTCAGATTGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTTGGACCGCCCGCACTACACAAAGCTACCTCCAGAAATTGAGGTTTACTGTAGATACAGACGTTTCCAGACACCGTAGTAAATTGATTTTTAAATGTTATATTTGCAGTATCTTGTTTTGCATTGTGTTGTAAAGAGATGTTTTATTATGGAGCGAAATCACTGCAGTTTGATGTGACCGCATGAAGCAATACAACATAGATACCGACGCCAGACAAGCCGAACTTCATTTGGTGCCAAGAAAAGTTTACGTTACGGATCAATTTAAGGTGGTGCTAACCGTGAGATTTAATTTATTTCAGATTATTCGCAACTATAGCCTATAAACAACATCCGGATTGCGTATCTTTTGCACAAAATTGAAAATTCCCTCTCCGACCGTCTTCCGCTAGCTGACTGAATTTGTTGCGTTAGCACAGCCCCACCTTTCCATTGTGAATCTGATTCTCTGGGAATAATATTGGATAATCTAACGACGGATCGTGAGTCAGATACGCAGTCAGGGCCGATGATTGGGTGTTCAGGGTTATGCTGGAGATCAGGCAGCGGGAACATGAGTGTGTGTGCGGGTTCTTGCACTATAACTGTAGTTCTGTAGAGTATTTTTAAAGCTATTTTTCTTGTGCTCTTCACAATTGATGTCACAAAAAGAACTTTTATAAACACTTATAAAATTATAAGTGGTGTCAACAGCAGTACAACAATTTGGTGAGAAAGACGGTGCACTGAACTGTTCGTTTTATTCTAACATGCAGAATTACTATATATTTTCAGCGCACCTTTCCGCAAACCAGGGGGTTTCAACTTTACAATGGGCATCATGAAAAACGAGCAGAATTAATTTAGCACAAATTGCGGTAAATATACACAAATACAACAATTAATATATGATTTTCTGAATGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00281889_00289711.mRNA True 3903 mRNA 0.52 7 280912 290480

Neighbor

gene id symbol gene type direction distance location
CI01000186_00261713_00270433 CRY1BB coding downstream 10402 261423 ~ 270510 (-)
CI01000186_00259516_00260745 NA coding downstream 19723 259416 ~ 261189 (-)
CI01000186_00240507_00248051 DENND2DB coding downstream 32861 240329 ~ 248084 (-)
CI01000186_00238503_00238674 NA coding downstream 42238 237138 ~ 238674 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding downstream 57333 215399 ~ 223764 (-)
CI01000186_00304422_00316712 ZNF76 coding upstream 13838 304318 ~ 316863 (-)
CI01000186_00318098_00318475 NA coding upstream 27248 317728 ~ 318475 (-)
CI01000186_00340443_00342720 ELF3 coding upstream 49791 340271 ~ 342966 (-)
CI01000186_00360860_00361637 NA coding upstream 70160 360640 ~ 366991 (-)
CI01000186_00408656_00408943 NA coding upstream 117655 408135 ~ 408943 (-)
G378399 NA non-coding downstream 39841 240855 ~ 241071 (-)
G378476 NA non-coding downstream 64869 215782 ~ 216043 (-)
G378456 NA non-coding downstream 160744 119741 ~ 120168 (-)
G378457 NA non-coding downstream 162593 117796 ~ 118319 (-)
G378455 NA non-coding downstream 164042 114368 ~ 116870 (-)
G378480 NA non-coding upstream 10406 300886 ~ 301234 (-)
G378481 NA non-coding upstream 11731 302211 ~ 302489 (-)
G378482 NA non-coding upstream 32049 322529 ~ 322781 (-)
G378517 NA non-coding upstream 153908 444388 ~ 444877 (-)
G378520 NA non-coding upstream 157629 448109 ~ 448422 (-)
G378466 NA other downstream 87152 192170 ~ 193760 (-)
G378458 NA other downstream 159487 120682 ~ 121425 (-)
G378509 NA other upstream 105778 396258 ~ 396755 (-)
CI01000186_00485805_00522951 CELSR2 other upstream 195316 485796 ~ 523767 (-)

Expression


Co-expression Network