CI01000186_00413028_00415878 (SFRS3, SRSF3)


Basic Information

Item Value
gene id CI01000186_00413028_00415878
gene name SFRS3, SRSF3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 412601 ~ 416323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00413028_00415878.mRNA
GTATAAATGGCACGTTAACTAGCAGGGCAGGGTATTGACACACAATTCACGTTTCAATTGGATTTACAATTTTTTTTTAATGTCAAATCTCTGGGATAATGCTGTAAACTATACGGGGAAGCAGTTGGTACATTACTATATAAGGTTAAATGAACAATTTTGCAAACAAGGCAGATTTGATATTAATGTTATAACTTTTAATGAGTCATAAACTTGTTTTCATAATGGATTTATTCAACCATACATGAAATATTGAAGAACGGGTTAAGTTAAAATGTAATATCTAGAGTGCATGTTTTTATCACATTTATTGAGTTTCATGAAAAAATCAACAGAATTTCAAAGTCGAGACTATTTCATAAATAAAATAACAAATCTCATTACTTTTATGTAACGGTAACATCTCTTACGTTGTGCAGATTGAGCCATGCATCGCGACTGCCCTCTGGACTGCAAGGTGTACGTTGGGAATCTGGGAAACAATGGGAATAAGTCCGAACTGGAGAGGGCGTTCGGTTATTACGGACCCCTGAGGAGCGTGTGGGTGGCCAGGAACCCTCCTGGCTTTGCGTTCGTTGAGTTCGAGGACCCTCGTGACGCCACAGACGCCGTCAGAGAGCTGGACGGACGCCGACGTCCACGCGACGACTACCGCAGGCGAAGCCCGCCTCCCAGGCGCAGATCGCCCAGGAGGAGGAGCTTCAGTCGCAGTCGTAGCAGAGAACGTAGGAGGGAGAGATCGCTGTCCCGCGACAGGAACCACAAGCCTTCGCGATCTTTCTCCCGATCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAACCACAACTCTGAGAAAAACGTTGTGACGGGAAAACGTCGATCAAAAACTTTGAAAAGACTTTATTGCTCCGAGTCCCCCATTTATTTTGTTTTTTTTATGAACATTATTTTAGCGGTTCTCTTTCCTTCTGTAGCTGCGGTTTTAATGCGACAGCATTCCATCTCACACTTCTTTTAAGACCTTTTTTTTTTTTTTTTTAATTTTATTTGTTTTTGTCGGTGAATGTGATTGGTCCTGCTGCGCTGAGCTCATTTCCTGTCGTCTGAGCTCGACCGCAAGCGTTTTGCTTTGTTTGTGTGCGATCAGAGGGGGAAGGTGTAACGGCACTGTGTCGCCAGCAGGGGGTGGAATGAAGAACAGCTTTCATTCTCGTGTTTGTTTTTTTCCTTGTAGTGTTTGTACTGTTTATAATGTTGATCTGAA

Function

symbol description
srsf3 Enables RNA binding activity. Involved in mRNA export from nucleus and regulation of mRNA splicing, via spliceosome. Located in nuclear speck. Biomarker of bipolar disorder and ovary epithelial cancer.
sfrs3 serine/arginine-rich splicing factor 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00413028_00415878.mRNA False 1248 mRNA 0.43 5 412601 416303

Neighbor

gene id symbol gene type direction distance location
CI01000186_00402892_00406010 APOBEC2A coding upstream 6468 402892 ~ 406133 (+)
CI01000186_00295882_00296578 BTG2 coding upstream 115650 295669 ~ 296951 (+)
CI01000186_00272056_00278805 RBBP5 coding upstream 133424 271668 ~ 279177 (+)
CI01000186_00252556_00256882 NA coding upstream 155332 252556 ~ 257269 (+)
CI01000186_00235234_00237816 DRAM2, DRAM2B coding upstream 174480 234897 ~ 238121 (+)
CI01000186_00420359_00420723 NA coding downstream 4056 420359 ~ 421445 (+)
CI01000186_00422121_00422913 NA coding downstream 5779 422082 ~ 424110 (+)
CI01000186_00427652_00430661 TMCC2 coding downstream 11349 427652 ~ 431316 (+)
CI01000186_00444836_00447109 BYSL coding downstream 28481 444784 ~ 447234 (+)
CI01000186_00447837_00449357 NA coding downstream 31534 447837 ~ 449357 (+)
G378208 NA non-coding upstream 92479 318162 ~ 320122 (+)
G378213 NA non-coding upstream 95069 317330 ~ 317532 (+)
G378204 NA non-coding upstream 164427 245430 ~ 248174 (+)
G378117 NA non-coding upstream 247154 162974 ~ 165447 (+)
G378187 NA non-coding upstream 254025 158339 ~ 158576 (+)
G378300 NA non-coding downstream 72499 488802 ~ 492677 (+)
G378322 NA non-coding downstream 149693 565996 ~ 566341 (+)
CI01000186_00567272_00571417 NA non-coding downstream 150659 566929 ~ 571768 (+)
G378325 NA non-coding downstream 220715 637018 ~ 637549 (+)
G378327 NA non-coding downstream 233509 649812 ~ 650154 (+)
G378108 NA other upstream 399106 11415 ~ 15229 (+)
G378343 NA other downstream 478205 881526 ~ 896717 (+)

Expression


Co-expression Network