CI01000186_00525649_00532282 (CAPZB, CAPZB.L)


Basic Information

Item Value
gene id CI01000186_00525649_00532282
gene name CAPZB, CAPZB.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 525556 ~ 532353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00525649_00532282.mRNA
AGGGCTTGTTTGTTGGGTCTGAGGGTTTTAGTGATGCAGTATTTTGACAGTGTTTGAGGTTGTGTATATAAATGAGAGGCCAGGTTCTTTTGGTTGAAGCGAAGATCTGTCTCAGGGACAGAGTAAACCACAGCCCTTCAGCCAGACGAGTGTTTATCTCTGCTTTGTGCTTCAGCGGCGAGTCCAGTTTAGATGTTCTGCTGGAGCAGACGCTCTTCACACCAGCCACATTTAGGCCCGGAGCAGAACGAGCAGCAGTTGGACTGTGCGCTGGACCTGATGAGGCGTTTGCCTCCGCAGCAGATCGAGAAGAACCTCAGCGACCTGATCGACCTGCGTTGTTAGCCGTTATTAGCGCTGGTGTCAGTCACGCCGCAGGAGCAGCGGCTCTCTGGGTTCGGTCACATGTTTCTCATCGCTGCTCCAGTGTGATTTTCACCTTCAGGAAATCCCCCTGGAGTAATAAATACGAGCCTCCAATCGACGATGGCGCCATGCCGTCCGCGCGTCTGCGTAAGCTGGAGGTGGAGGCCAACAACGCCTTCGACCAGTACAGAGACCTGTATTTTGAGGGCGGGGTTTCCTCCGTCTACCTGTGGGATCTGGATCACGGCTTCGCCGGCGTCATCCTCATTAAGAAAGCCGGCGACGGCTCCAAGAAGATCAAGGGCTGCTGGGACTCCATCCATGTGGTGGAGGTGCAGGAGAAGTCCAGCGGCCGCACGGCTCATTATAAACTCACGTCCACCGTCATGCTGTGGCTGCAGACCACCAAAACCGGCTCTGGAACCATGAACCTGGGCGGCAGCCTCACCCGACAGATGGAGAAAGATGAGACGGTCGGTGAATCTTCCCCTCACATCGCCAACATCGGCCGCCTGGTGGAGGACATGGAGAACAAGATCCGCTCCACTCTCAACGAGATTTACTTCGGCAAGACCAAGGACATCGTCAACGGCCTGAGGAGCGTCCAGACGCTTGCGGATAAATCGAAGCAGGAGGCTCTGAAGAACGACCTGATGATAGCGCTTAGCCAACGCAAGCAGCAAAGCTAGAGACGATCACCTACCCGTCTCTCTCTCTCCGTCTGTCTCACTCTTTCTGTCTCTCCACCTCACATCTGTCTGTCTCCATCTGTGGAAAACAAA

Function

symbol description
capzb Predicted to enable actin filament binding activity. Acts upstream of or within muscle cell development and neural crest cell migration. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of F-actin capping protein complex. Is expressed in fin bud; head; pharyngeal arch; and somite. Used to study cleft palate. Orthologous to human CAPZB (capping actin protein of muscle Z-line subunit beta).

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process

KEGG:

id description
K10365 CAPZB; capping protein (actin filament) muscle Z-line, beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00525649_00532282.mRNA True 1148 mRNA 0.55 9 525556 532353

Neighbor

gene id symbol gene type direction distance location
CI01000186_00485805_00522951 CELSR2 coding downstream 1789 485796 ~ 523767 (-)
CI01000186_00453106_00464818 NUAK2 coding downstream 60738 452092 ~ 464818 (-)
CI01000186_00433415_00435816 USP49 coding downstream 89562 432833 ~ 435994 (-)
CI01000186_00408656_00408943 NA coding downstream 116613 408135 ~ 408943 (-)
CI01000186_00360860_00361637 NA coding downstream 162856 360640 ~ 366991 (-)
CI01000186_00588218_00590230 ORA4 coding upstream 55865 588218 ~ 590804 (-)
CI01000186_00640328_00644798 MFAP2 coding upstream 106819 639172 ~ 648186 (-)
CI01000186_00656484_00658437 SDHB coding upstream 123940 656293 ~ 658614 (-)
CI01000186_00723511_00725818 NA coding upstream 190973 723145 ~ 725921 (-)
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding upstream 217190 749543 ~ 761177 (-)
G378522 NA non-coding downstream 74138 451036 ~ 451418 (-)
G378520 NA non-coding downstream 77134 448109 ~ 448422 (-)
G378517 NA non-coding downstream 80679 444388 ~ 444877 (-)
G378482 NA non-coding downstream 202775 322529 ~ 322781 (-)
G378481 NA non-coding downstream 223067 302211 ~ 302489 (-)
G378539 NA non-coding upstream 3353 535706 ~ 535908 (-)
G378540 NA non-coding upstream 3840 536193 ~ 536507 (-)
G378541 NA non-coding upstream 4276 536629 ~ 536950 (-)
G378591 NA non-coding upstream 50800 583153 ~ 583369 (-)
G378590 NA non-coding upstream 52498 584851 ~ 585279 (-)
G378509 NA other downstream 128801 396258 ~ 396755 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 277472 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 301792 215399 ~ 223764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019914 capzb coding NC_007133.7 CM002906.2 396840 ~ 410544 (+)
bowfin (Amia calva) AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding CM030136.1 CM030136.1 11882073 ~ 11892699 (-)