CI01000186_00542490_00549351 (NBL1)


Basic Information

Item Value
gene id CI01000186_00542490_00549351
gene name NBL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 542490 ~ 549605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00542490_00549351.mRNA
ATGAGATCCGTCAGCGGGACATCAGACACAGAGACGCTCGAGAAACCGTTATTTGCAGCAGCTCCAGGTGTCGTGATGTGTCTGCGCGTTCTGCTGGCGTGTTTGCTGCTCGAGTTCTGCTGCGCGGCTCCACACGCTCACATCAACCGCCTCGCACTCTTCCCCGACAAGAGCGCCTGGTGCGAAGCCAAAAACATCACGCAGATCGTCGGACACACGGGCTGCACACCACGATCCATCCAAAACAGGGCCTGTCTGGGTCAGTGTTTCAGCTACAGTGTGCCCAACACCTTCCCACAATCCACTGAGTCTCTGGTCCACTGTGACTCCTGCATGCCGGCGCAGACGCAGTGGGAGGTGGTGACTCTGGACTGCTCCGGCAGCGATGAAGCCCCGCGCGTGGATAAGCTAGTGGAGCGCATCCTTCACTGCAGCTGCCAGTCGTGCAGTAAAGAGAGCGGCCAGGAGGGGGCGCTGCTGCAGCTGTACCCGTCAGAGGGAGCGCTGGAGACGCCGCCGCTGTCAGACGCGACACACACGCACGCGCACCTAGACATACACGCGCCTGAGGCGGGGTGACGCGCGCTCACCGAACCTACTGAACGATCTGTCTCGCTCTGTTTGAAGCACTTTTTCACGTAGAGATCATGACATTAACTTTAGCACAATCACTGAAGCTTCAGTCAGCTCTGTGAATAAACGCGCACACACACACACACACACACACACGACTTTATATTACTGATGCATTTACACACGTCCAGATCTATATGTATACGTAATGTAGCCTACAGGAACACATGCAATCAGACTGTGTCACTTATGTAATCACA

Function

symbol description
nbl1 Predicted to enable BMP binding activity and receptor ligand activity. Acts upstream of or within semicircular canal formation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; head; pharyngeal arch 3-7; pharynx; and semicircular canal. Orthologous to several human genes including MICOS10-NBL1 (MICOS10-NBL1 readthrough).

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K19558 NBL1; neuroblastoma suppressor of tumorigenicity 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00542490_00549351.mRNA True 833 mRNA 0.56 4 542490 549605

Neighbor

gene id symbol gene type direction distance location
CI01000186_00466293_00479755 DSTYK coding upstream 62499 466293 ~ 479991 (+)
CI01000186_00447837_00449357 NA coding upstream 93133 447837 ~ 449357 (+)
CI01000186_00444836_00447109 BYSL coding upstream 95256 444784 ~ 447234 (+)
CI01000186_00427652_00430661 TMCC2 coding upstream 111174 427652 ~ 431316 (+)
CI01000186_00422121_00422913 NA coding upstream 118380 422082 ~ 424110 (+)
CI01000186_00567272_00571417 NA coding downstream 17324 566929 ~ 571768 (+)
CI01000186_00572513_00575244 CCNL2 coding downstream 22908 572513 ~ 575315 (+)
CI01000186_00576917_00577699 NA coding downstream 27312 576917 ~ 577818 (+)
CI01000186_00578242_00581296 CCNL2 coding downstream 28511 578116 ~ 581373 (+)
CI01000186_00584169_00586048 ORA3 coding downstream 34419 584024 ~ 586058 (+)
G378300 NA non-coding upstream 49813 488802 ~ 492677 (+)
G378208 NA non-coding upstream 222368 318162 ~ 320122 (+)
G378213 NA non-coding upstream 224958 317330 ~ 317532 (+)
G378204 NA non-coding upstream 294316 245430 ~ 248174 (+)
G378117 NA non-coding upstream 377043 162974 ~ 165447 (+)
G378322 NA non-coding downstream 16391 565996 ~ 566341 (+)
G378325 NA non-coding downstream 87413 637018 ~ 637549 (+)
G378327 NA non-coding downstream 100207 649812 ~ 650154 (+)
G378350 NA non-coding downstream 202524 752129 ~ 752425 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 126167 412601 ~ 416323 (+)
G378108 NA other upstream 528995 11415 ~ 15229 (+)
G378343 NA other downstream 344903 881526 ~ 896717 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020643 CABZ01085139.1 coding NC_007133.7 CM002906.2 56644 ~ 57177 (-)