CI01000186_00572513_00575244 (CCNL2)


Basic Information

Item Value
gene id CI01000186_00572513_00575244
gene name CCNL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 572513 ~ 575315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00572513_00575244.mRNA
ATGGCGGCGGCCGCCGGACTGATTCTGCCCGGTGACGGGATCATGATCGCGGGTAAACTCTACTCGGGTGTCGCGCTCACTCTGGAGAACTGCCTGCTGCCGCCCGAGAGCGTGCACTGCAGCCCCTCGCGCGCTCACGGACTGTCCGCGCGCACGGAGGAGCAGCTACGGATCCGGATGTGCGAGATGATCCAGAACGCGGGAGTTCTTCTCCGCCTGCCTCAGGTTGCCATGGCAACGGCCCAGATCCTGTTCCACCGGTTCTTCTACTGTAAATCGTTCGTGAGACACTGCGCGGAGACGGTCGCCATGGCGTGTCTTCAGCTCGCGTCTAAGATCGAAGAGGAGCCGCGGCGAGTGAGGGACGTCCTGAACGTCTTCCACCACCTCAAGCACGCCGCGGGAAACAGGCTCGTCAGCCCCCTGCTGCTGGATGAGGTGTATGTCAGCCGCAAGAGTCACGTGATCAAAGCGGAGCGACGCGTCCTGAAGGAGCTCGGCTTCTGCGTCCACGTCAAACACCCACACAAGGTGATCGTGATGTATCTTCAGGTTCTGGAGTGTGAGAAGAACACCAGACTGCTTCAGATAGCCTGGAACTACATGAACGACAGCTTGAGGACTGACGTGTTTTTGAGATTTAGCGCTGAAACGGTCGCGTGCGCGTGTATCTTTCTTTCTGCAAGAGTATTACAGGTGAATCACATTTGAGCTTCTATCTGGTGACGTTATGTTATTCAGATAGTTTTATGTTTGTATTTTTTTTTCATCCCCTAGCTCCA

Function

symbol description
ccnl2 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
Si:ch211-203b8.5 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00572513_00575244.mRNA True 782 mRNA 0.56 6 572513 575315

Neighbor

gene id symbol gene type direction distance location
CI01000186_00567272_00571417 NA coding upstream 745 566929 ~ 571768 (+)
CI01000186_00542490_00549351 NBL1 coding upstream 22908 542490 ~ 549605 (+)
CI01000186_00466293_00479755 DSTYK coding upstream 92522 466293 ~ 479991 (+)
CI01000186_00447837_00449357 NA coding upstream 123156 447837 ~ 449357 (+)
CI01000186_00444836_00447109 BYSL coding upstream 125279 444784 ~ 447234 (+)
CI01000186_00576917_00577699 NA coding downstream 1602 576917 ~ 577818 (+)
CI01000186_00578242_00581296 CCNL2 coding downstream 2801 578116 ~ 581373 (+)
CI01000186_00584169_00586048 ORA3 coding downstream 8709 584024 ~ 586058 (+)
CI01000186_00592130_00592897 FNDC10 coding downstream 16539 591854 ~ 592899 (+)
CI01000186_00597558_00603062 SSU72L, SSU72 coding downstream 22243 597558 ~ 603387 (+)
G378322 NA non-coding upstream 6172 565996 ~ 566341 (+)
G378300 NA non-coding upstream 79836 488802 ~ 492677 (+)
G378208 NA non-coding upstream 252391 318162 ~ 320122 (+)
G378213 NA non-coding upstream 254981 317330 ~ 317532 (+)
G378325 NA non-coding downstream 61703 637018 ~ 637549 (+)
G378327 NA non-coding downstream 74497 649812 ~ 650154 (+)
G378350 NA non-coding downstream 176814 752129 ~ 752425 (+)
G378351 NA non-coding downstream 178194 753509 ~ 753729 (+)
G378352 NA non-coding downstream 178677 753992 ~ 754221 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 156190 412601 ~ 416323 (+)
G378108 NA other upstream 559018 11415 ~ 15229 (+)
G378343 NA other downstream 319193 881526 ~ 896717 (+)

Expression


Co-expression Network