CI01000186_00578242_00581296 (CCNL2)


Basic Information

Item Value
gene id CI01000186_00578242_00581296
gene name CCNL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 578116 ~ 581373 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00578242_00581296.mRNA
ATATATATGTGGTAACTGTGGTGATGAGGGTATGAGGTCACCGAGACGTCACTGAGAGAAGCTTCATAAATGCTGGAAAAACCTCAAGCGCTTTGATCACTCGATTGTCCAGTGATCAGGTGAATCATGGCCGCTAAAGCCCCGAGCGCCTCTCAGCGCACGCCGTCGTCTGTGCTCTACATCACCGTGTACCTCATTCTGGTGCTGCTGGGGAACGTGGGAAACACCACGGTCATCGGAGTGGTCGGCGAAAGCCTTCTGCGGGAGCCGGGAGTCGTCCGGAGCTCTGACATCATTCTGGTCAACATGGCTTTCTCCAACCTGATGGTGTCGTTGGCCAGAAACTCTCTTCTGGTGATCTCCGACATGGGAATGGAGGTTTTCCTCAATAAAAACTGGTGTCGTTTCATGATGGGCATCTGGGTTTGGCTCCGCTCCGCAAACGTTTGGTCGACGTTCTTTCTGAGCGCGTTCCACTTTCAAACGCTGCGGCGGGTCGCCCCGGCCGTCACAAACGTGCACGGTCACCCCGGACCCCCCAAATCCCTCATATTCGGGCTGTGTCTCATCTGGAGCCTCAATCTGATCTACTCCATCCCAGCATTCGTCTTCTCCAAGAACGGAGACGAGAACTCCACCGAGTCGCTGATGCTGGTCAGCAGCACCACTCGGCCGCTGTTGGGCTGCATCTGGAGCTTTCCGTCAGTCTACAGCGGCCTGGCCTTCGCCACCTCCTCTATGGTGATCCATGAAACCATTCCCATATTCCTGATGAGCGTCACTAACCTGGGCTCCCTGTGGACGCTGTACTCTCACGGACAAACAAGAAGAGCCGCCAAACAAAGTCAGGATGCACCGGTCATCACCCGGATCCCTGCGGAGCGGCGGGCGGCTAAGGTGATTCTGGCGCTCAATATCCTCTTCATTTCGTCTTGGGGCACCAGCATCATCTCGGTCAACTACTTCAACTATAACCGCGGATCTTCCGCCGAGTTCCTGCTCATCGTCGCTCGCATCGCGAACATCACCTTCATCGCGCTGTCGCCCATCGTCCTCGCCGTGGGACACCGGAGACTCAGAGCGTTTATAAAGTCAATCCTGTCGCGTGTAGTCTGACAGACAGCTCTCTGTGGACAGATATCAAAGACAGATCACTTCATAAGTGTTTATGTGTGTCACATTATTTATTTTTA

Function

symbol description
ccnl2 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
vomeronasal type 1 receptor 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00578242_00581296.mRNA True 1193 mRNA 0.54 4 578116 581373

Neighbor

gene id symbol gene type direction distance location
CI01000186_00576917_00577699 NA coding upstream 298 576917 ~ 577818 (+)
CI01000186_00572513_00575244 CCNL2 coding upstream 2801 572513 ~ 575315 (+)
CI01000186_00567272_00571417 NA coding upstream 6348 566929 ~ 571768 (+)
CI01000186_00542490_00549351 NBL1 coding upstream 28511 542490 ~ 549605 (+)
CI01000186_00466293_00479755 DSTYK coding upstream 98125 466293 ~ 479991 (+)
CI01000186_00584169_00586048 ORA3 coding downstream 2651 584024 ~ 586058 (+)
CI01000186_00592130_00592897 FNDC10 coding downstream 10481 591854 ~ 592899 (+)
CI01000186_00597558_00603062 SSU72L, SSU72 coding downstream 16185 597558 ~ 603387 (+)
CI01000186_00606096_00608919 TMEM240B coding downstream 24723 606096 ~ 609198 (+)
CI01000186_00611336_00614260 NA coding downstream 29963 611336 ~ 614580 (+)
G378322 NA non-coding upstream 11775 565996 ~ 566341 (+)
G378300 NA non-coding upstream 85439 488802 ~ 492677 (+)
G378208 NA non-coding upstream 257994 318162 ~ 320122 (+)
G378213 NA non-coding upstream 260584 317330 ~ 317532 (+)
G378325 NA non-coding downstream 55645 637018 ~ 637549 (+)
G378327 NA non-coding downstream 68439 649812 ~ 650154 (+)
G378350 NA non-coding downstream 170756 752129 ~ 752425 (+)
G378351 NA non-coding downstream 172136 753509 ~ 753729 (+)
G378352 NA non-coding downstream 172619 753992 ~ 754221 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 161793 412601 ~ 416323 (+)
G378108 NA other upstream 564621 11415 ~ 15229 (+)
G378343 NA other downstream 313135 881526 ~ 896717 (+)

Expression


Co-expression Network