CI01000186_00588218_00590230 (ORA4)


Basic Information

Item Value
gene id CI01000186_00588218_00590230
gene name ORA4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 588218 ~ 590804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00588218_00590230.mRNA
ACTCGCAGAATTTAATAAGACTCCAGTAAATTAGGATGGGTTTATTTCTGGAAGTAAATATCCGGATTAGACCAGATAGCCTAATTTGGACGAACATTCTGGAAGAACGTTTGTTCAACTTTGAAAGAACATTGCCAGAACGTTCCCTGTTAGCGGTGAAACACCATATTAAATGCTAAAAACAACTATGAAACAGAAATCAATTCATAAAACAAAAACATAAAAAGACAACAAATTAACATATCAAATCATTATTTAAGTCAATAAAAAAGTGGTCATTCTATAGCCTCCTCCAGTTTTCACTGGATGTTCAACAATCACATTATCATTAGACTGAGTTTATCGTCACTCAGGCATTTAATAATTGATTAAAGATTAAAATCCCAAAGGCCTCAGAAGCCTGAATAACTGCAAAGTTTAATGGAGCCTGAAAACACGAGGTTGCGCATCTGAGCGTGCGTTCGCGTTTATATACAGAGCTGATGTGAACGCGCGCGACACAACGACCCGCGGCCTCGCGCACGATGGACAGGACGGACGCGGAGACGGACAGACAGACGTGAGAGAGACAGACATGTCTGAGGTGCTGACGGTGGACGCCATCCTCTTCGGCCTGCTGGTCTTCTCTGGCATCATAGGGAACATTCTGGTCATCTATGTGGTGTTTCAGTGCTCTAAGGAAAGCTCCTCTCGTCACTTGCCGCCATCCGACACCATCCTGGTCAACCTGTGCATGGCGAACCTGCTGACGTCGGTCTTCCGGACGGTGCCGATCTTCGTGTCGGATCTGGGTCTGGAGGTGTGGCTGTCGTCCGGCTGGTGCCGCGTCTTCATGCTGCTGTGGGTGTGGTGGCGGGCGGTGGGCTGCTGGGTCACGCTGGCCCTCAGCGGCTTCCACTGCGCCACCCTGCGGCGGCAGCACGTCTCCATGGGTCCGCAGGGTCAGCGGCAGGAGCGTCTGCGCGTCTGGGCGCTCCTGGCCGGCGTGTGGGCCGTCAACCTGCTCTTCTCCCTCCCGGCGCTGGTCTACACCACCCACGTGCGCGGAAACGCCACGGTGGAGCTGATGGTGATCAGCTGCACCACGCGCCCCCTGCTGGGCTGTGTGTGGGAGTTTCCCACCGACCAGCAGGGCTACGCCTTCGCCTCCACGTCGCTGGCGCTCAACGAGGTCATGCCGCTGATCCTGATGGTGGGCACCAACCTGGCGACGCTGCACGCGCTGGCCAAGCACATCCGGGCGGTGGCCGCCGCCGGCTCCGCCGAGCTGCACGTGTCCAGCGAGAGGAAGGCGGGTCACGTGATCATGGCTCTAGTGGCGCTGTTCGTGGGCTGCTGGGTGCTGCAGGTCGCCGCCGTCACCTACTACAACCACAACGGCGGGAAGCACAAGGAGGGACTGCTGACCGTGGCGCACTTCTCGGCCTCGCTCTTCGTGGGCTTCAGTCCGCTGGTGGTGGCGCTCGGACACGGGAAACTGCGGCGGAGGATCGGCGGGATTCTGCAGCGGTGGGCGCGCTGGATCAAACGGCCCGAGGAGAAACGCTCGGACAACAGCAGACAGACGGCGGAGACGGTCGTGAAAACAGCACAGAGCACAAAAAAGTGA

Function

symbol description
ora4 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; sensory perception of smell; and sensory perception of taste. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in crypt olfactory receptor neurons and olfactory epithelium.

NR:

description
vomeronasal type 1 receptor 4

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00588218_00590230.mRNA True 1609 mRNA 0.56 2 588218 590804

Neighbor

gene id symbol gene type direction distance location
CI01000186_00525649_00532282 CAPZB, CAPZB.L coding downstream 55865 525556 ~ 532353 (-)
CI01000186_00485805_00522951 CELSR2 coding downstream 64451 485796 ~ 523767 (-)
CI01000186_00453106_00464818 NUAK2 coding downstream 123400 452092 ~ 464818 (-)
CI01000186_00433415_00435816 USP49 coding downstream 152224 432833 ~ 435994 (-)
CI01000186_00408656_00408943 NA coding downstream 179275 408135 ~ 408943 (-)
CI01000186_00640328_00644798 MFAP2 coding upstream 48368 639172 ~ 648186 (-)
CI01000186_00656484_00658437 SDHB coding upstream 65489 656293 ~ 658614 (-)
CI01000186_00723511_00725818 NA coding upstream 132522 723145 ~ 725921 (-)
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding upstream 158739 749543 ~ 761177 (-)
CI01000186_00763236_00766749 SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S coding upstream 172278 763082 ~ 766749 (-)
G378592 NA non-coding downstream 2122 585845 ~ 586096 (-)
G378590 NA non-coding downstream 2939 584851 ~ 585279 (-)
G378591 NA non-coding downstream 4849 583153 ~ 583369 (-)
G378541 NA non-coding downstream 51268 536629 ~ 536950 (-)
G378540 NA non-coding downstream 51711 536193 ~ 536507 (-)
G378564 NA non-coding upstream 46845 637649 ~ 639093 (-)
G378560 NA non-coding upstream 62999 653803 ~ 654892 (-)
G378552 NA non-coding upstream 76242 667046 ~ 671996 (-)
G378600 NA non-coding upstream 81605 672409 ~ 672749 (-)
G378604 NA non-coding upstream 111484 702288 ~ 703665 (-)
G378509 NA other downstream 191463 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 221227 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 340134 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 364454 215399 ~ 223764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019913 ora4 coding NC_007133.7 CM002906.2 374478 ~ 378236 (+)