CI01000186_00592130_00592897 (FNDC10)


Basic Information

Item Value
gene id CI01000186_00592130_00592897
gene name FNDC10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 591854 ~ 592899 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00592130_00592897.mRNA
CTTTATATTTCCATCTTTATTTACATCAAATCCTTATCAGTCTGCTTAATAATGATATTCGAAGTTGTTAAGTTCGTCTTGTATTCAGAGATTCAGCCGTTATTGTTTATTGGAGGTCGGTGTGTGCAGCATGAGTCGGTGTTTTGAGTTCGGTTCATTCTGGGTTTTTTTTTTTTTTGCAGGTCGTCGCGCGCATCTGTGTGATGGCGACCGCACGCGCTCCAGTATTCTCCGCATCTGTCCGCCGTTTGTGAACATATAAGCGATAAATCAGACATGGCAGGCCATCAGGGATCTGTTGTCCTCCGCTGCTGCTTCGCTGTTCTGCTGCTTCTCAGCAGTGCTTTACCGAACCGGACCAGCAGCGTCCGTGATGCGCAATACAGTAATAATACCAATAAATTCGACTCTGAGCGGATACCAAAGCTACAGGACAACAGCACTACTGTGAGACGGTGGCGTGTTCTGGGTGAAGTCGGACCGCTGTGCGCCTACCGCACTCTTGACGCAGGTGACCCCGGGCGTCTGTGCTTCCGGTACACCCTACCGGACTTCAGGTGCGCCGGTGCGTCCTGTCGACAGGTGAGCTCACCTGACGGACAGCTCACTGCCAACATCCTGTCCAACGGAAGCGTGTTTATTCAGTGGACGGCTCACGCCCCACCAAAGAGCCTCGCACCGGGGCAGGCGGGCGGCTTCAGGCTCAGCTGCTGGTGGAATGGCAGCTACACGCAGTTCGAATGCGCCGTTGTGCATTTAGGCAGCAGCTGCAGGGATTATTTACTCAACGAGCTGCACGCCAACGTGCCGTACCGCCTCTGCGTACGGCCCTACGCCCTCGACCAGGCCGAAGCCTGCGTGGAGTTCAGCCTCCAGCCCAGCGGGATGCAGGACATCGTTATCGCCATGACAACAGTGGGCGGAGCCATCTGCGTGATGCTGGTCATCATTTGTCTGCTGGTGGCGTACATCACCGAAAACATCATGAACCCGACGCTGACGGCGCAGCACTCGCACAGATCACACCTACACACACACCTGTGAAA

Function

symbol description
fndc10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC10 (fibronectin type III domain containing 10).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00592130_00592897.mRNA True 1046 mRNA 0.54 1 591854 592899

Neighbor

gene id symbol gene type direction distance location
CI01000186_00584169_00586048 ORA3 coding upstream 5796 584024 ~ 586058 (+)
CI01000186_00578242_00581296 CCNL2 coding upstream 10481 578116 ~ 581373 (+)
CI01000186_00576917_00577699 NA coding upstream 14036 576917 ~ 577818 (+)
CI01000186_00572513_00575244 CCNL2 coding upstream 16539 572513 ~ 575315 (+)
CI01000186_00567272_00571417 NA coding upstream 20086 566929 ~ 571768 (+)
CI01000186_00597558_00603062 SSU72L, SSU72 coding downstream 4659 597558 ~ 603387 (+)
CI01000186_00606096_00608919 TMEM240B coding downstream 13197 606096 ~ 609198 (+)
CI01000186_00611336_00614260 NA coding downstream 18437 611336 ~ 614580 (+)
CI01000186_00620849_00622738 CROCC coding downstream 27950 620849 ~ 622738 (+)
CI01000186_00627673_00630509 CROCC coding downstream 34774 627673 ~ 630509 (+)
G378322 NA non-coding upstream 25513 565996 ~ 566341 (+)
G378300 NA non-coding upstream 99177 488802 ~ 492677 (+)
G378208 NA non-coding upstream 271732 318162 ~ 320122 (+)
G378213 NA non-coding upstream 274322 317330 ~ 317532 (+)
G378325 NA non-coding downstream 44119 637018 ~ 637549 (+)
G378327 NA non-coding downstream 56913 649812 ~ 650154 (+)
G378350 NA non-coding downstream 159230 752129 ~ 752425 (+)
G378351 NA non-coding downstream 160610 753509 ~ 753729 (+)
G378352 NA non-coding downstream 161093 753992 ~ 754221 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 175531 412601 ~ 416323 (+)
G378108 NA other upstream 578359 11415 ~ 15229 (+)
G378343 NA other downstream 301609 881526 ~ 896717 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location