CI01000186_00620849_00622738 (CROCC)


Basic Information

Item Value
gene id CI01000186_00620849_00622738
gene name CROCC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 620849 ~ 622738 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00620849_00622738.mRNA
CTGGAGCAGGCGCTGCGGCTGGAGACGGCCGAGGACGGGCGGGACTCTCCTGAGTCTCGCAGTCTGGCGCAGCAGAACGTGGATCTGCGCAGACGGCTGGACGAGGAGCAGGCGGCGTATAAACGCAAGCTCACGGCGTATCAGGAGGGGCAGCAGAGACAAGCACAGCTCGTACAGAAACTACAGGGCAAGGTCCTGCAGTACAAGAAGAAGTGTGGAGATCTGGAGCAGATGCTGCTGGAGAAATCTACTGGCGGCAGTAACGGTCACCGGCACGACGACGACGAGCCCAGCAGCGAGCTGGAGAGCGCCCTCATCCGCCTGGAGGAGGAACAGCAGAGGTCTCACACTCACTCACTGATCTGCGTCTGCACTCAGCTGGAACAGGCCGGACTGGCCAACGAGGCGCTCAGCCAGGACATCCGCAGACTCACTGCTGATTGGACCAAAGCGAGGGAGGAGCTGGAGCAGAGGGAATCTGATTGGAGGAGAGAGGAGGAGTCTTTCCACAGCTACTTCAGCAGCGAGCACAGCCGTCTGCTGGCGCTCTGGAGGCAGGTGGTGGGCTTCCGCAGGCACGTCTGCGAGCTGAAGAGCGCCACCGAGAGGGATCTGTCCGAGGCGCGTAACGAGCTGGCGTGTGCGGCGCAGAGCGTGCAGCTGCAGTGTGTGAGCGCCTGCGCGGCTCTGCGCAGCCGTGAGGATGGGTCTGCGCAGCTGCTGGAGAGAGAGACGGGCCAGCGGCTGCAGCTGGAGCAGCAGCTGAGAGAGACGGTGACGGAGATGATGACGCTACAGGCCAAGAGCGACTCGGAGAGGGCCGAGCTCAACACACG

Function

symbol description
crocc Orthologous to human CROCC (ciliary rootlet coiled-coil, rootletin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00620849_00622738.mRNA True 836 mRNA 0.63 6 620849 622738

Neighbor

gene id symbol gene type direction distance location
CI01000186_00611336_00614260 NA coding upstream 6269 611336 ~ 614580 (+)
CI01000186_00606096_00608919 TMEM240B coding upstream 11651 606096 ~ 609198 (+)
CI01000186_00597558_00603062 SSU72L, SSU72 coding upstream 17462 597558 ~ 603387 (+)
CI01000186_00592130_00592897 FNDC10 coding upstream 27950 591854 ~ 592899 (+)
CI01000186_00584169_00586048 ORA3 coding upstream 34791 584024 ~ 586058 (+)
CI01000186_00627673_00630509 CROCC coding downstream 4935 627673 ~ 630509 (+)
CI01000186_00630683_00632213 CROCC coding downstream 7945 630683 ~ 632227 (+)
CI01000186_00652978_00654267 NA coding downstream 30153 652891 ~ 654900 (+)
CI01000186_00659009_00660385 MRPL20 coding downstream 35968 658706 ~ 660444 (+)
CI01000186_00661361_00666431 ATAD3A.S, ATAD3, ATAD3A.L, ATAD3B, ATAD3A coding downstream 38294 661032 ~ 666460 (+)
CI01000186_00567272_00571417 NA non-coding upstream 52022 566929 ~ 571768 (+)
G378322 NA non-coding upstream 54508 565996 ~ 566341 (+)
G378300 NA non-coding upstream 128172 488802 ~ 492677 (+)
G378208 NA non-coding upstream 300727 318162 ~ 320122 (+)
G378213 NA non-coding upstream 303317 317330 ~ 317532 (+)
G378325 NA non-coding downstream 14280 637018 ~ 637549 (+)
G378327 NA non-coding downstream 27074 649812 ~ 650154 (+)
G378350 NA non-coding downstream 129391 752129 ~ 752425 (+)
G378351 NA non-coding downstream 130771 753509 ~ 753729 (+)
G378352 NA non-coding downstream 131254 753992 ~ 754221 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 204526 412601 ~ 416323 (+)
G378108 NA other upstream 607354 11415 ~ 15229 (+)
G378343 NA other downstream 271770 881526 ~ 896717 (+)

Expression


Co-expression Network