CI01000186_00627673_00630509 (CROCC)


Basic Information

Item Value
gene id CI01000186_00627673_00630509
gene name CROCC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 627673 ~ 630509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00627673_00630509.mRNA
CTGGTGTTCTCTGACAGTGACGGTGTGGACGGAAACACTGAAGAGTCTCTGCTGCCACTGCTGCGCTCTTCATCCTCATCATCATCATCACTACCCATCATCCCTGACAGCTGTCTGTCTGCACTGCGCTCCACTCTGAACAACAGACAGATCCAGCTACAGACCTGTCTGCCTCTCTCTCTCAGTGAGAAGGATGACGCAGGTAAAGCGGCGCAGGCAGCGCAGACGCAGGTGCAGCTGCTGCAGCTGGAGTGTGAGAGGCTGCAGCTGTCTGCGACGTCTGCGCAGAGAGAGCGAGAGCACGAGCGAGATGAGAGAGACGCCGCCGCGCTGGAGAGAGACCGAGCACGAGCAGAGACGGACAGAATAAGATATTTGTATTTTGATGTGCAGAGTGAAAGCAGTCGCGCTGAACTCTCGCTAACGGTCACGAAGCTTCACTCGGAGGAGTCGTCACTCCGAGATTCTCTCGCTAAGATGAGCGCCATTAACGAGAGTCTCGCGCAGGACAAATCTGACCTCAACAGCCTCATCGTTCAGCTGGAGGAGGAAAAGAATGCGCTGCTGTCTCAGCGAAGAGAAGCGCAACAAGAGAAACTGACCATCAGAGACGAGCTCGTCCGCTCCGAGCAGGACCGGCTGGAGCTGGACTCTGTCCGTCTCGCTCTCCACCAATCACTGCAGGAGTCTGAGCTGGCCAGGGCGGGGCTGGAGGCGGAGCTTCAGTCGCTGCAGGCAGACAGAGTCAAACTGCAAGACAGAATTACACAGCTGAATGGTGAGATGGGCGGTCTGGAGGCGGAGCTTGGTTCTATCCGCGGTGAAGGCGACAGGCAGAGCGCCGCTCTGGAGGAGGTGGGGCGTGGGCGGGCGGAGCTAGTGCGAGAGAGGGCGGGGCTTTTGGTTCAGCTGACGGCGTCAGAGAGAGAGAACGCCGCCCTGACTGAGGAGATCGCCACCTTCAGGTCGGAGAGGGAGGCTCTGGAGACGAGTCTTTACGAGCTGCAGCAGCAGATAAATCAAACCGAGTCTCGCCGTGAGCAGCTGGAGTCGGAGAACCAGAACCTGAGATTGCGTAACGACAGCACGACAGTGGAGCTGAAGCGTTTGCGCACGGAGAGAGAGACAGTTCTGTCTCAGAGTGAGAAAGAGAAAGACGCGCTGAGAGACGCGCTCGCGGCCGCTCAACACGAAGCACAGCGAGCTCTGCGCACGGCCCTGTCCGACCACCAGGAGGAGCTGGAGAGACTGACCAATCAGAAGGAGGCGCTGCGCTGCAGACTGGAGGCTGAACAGGAGGGGGCGCTGCGGCGGGTCCGCGAACACCTGGAGGAGCAGATGATCCGGCTGGAGAGAGAGCGAGATGAACTTCAGGAAGAGCTTCGTTCCTTGCAGCGCGACAGGGACCAGAGTCTGTTACAGGCGGAGACGGACAAACAACAGGCGCTGTCCATGAAGGAGGCCGAGAAGGCGCTTCTGTCGGAGAAGGTGAGCGCCCTACAGGCGGAGCTGAGCACTGCAGCACTGGAGCAGGAGAGACTGAGCCGAGAAACGGCGCTCCTCAGAGACCAGGAGCGG

Function

symbol description
crocc Orthologous to human CROCC (ciliary rootlet coiled-coil, rootletin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00627673_00630509.mRNA True 1578 mRNA 0.59 9 627673 630509

Neighbor

gene id symbol gene type direction distance location
CI01000186_00620849_00622738 CROCC coding upstream 4935 620849 ~ 622738 (+)
CI01000186_00611336_00614260 NA coding upstream 13093 611336 ~ 614580 (+)
CI01000186_00606096_00608919 TMEM240B coding upstream 18475 606096 ~ 609198 (+)
CI01000186_00597558_00603062 SSU72L, SSU72 coding upstream 24286 597558 ~ 603387 (+)
CI01000186_00592130_00592897 FNDC10 coding upstream 34774 591854 ~ 592899 (+)
CI01000186_00630683_00632213 CROCC coding downstream 174 630683 ~ 632227 (+)
CI01000186_00652978_00654267 NA coding downstream 22382 652891 ~ 654900 (+)
CI01000186_00659009_00660385 MRPL20 coding downstream 28197 658706 ~ 660444 (+)
CI01000186_00661361_00666431 ATAD3A.S, ATAD3, ATAD3A.L, ATAD3B, ATAD3A coding downstream 30523 661032 ~ 666460 (+)
CI01000186_00676085_00686938 FBXO42 coding downstream 45048 675557 ~ 687650 (+)
CI01000186_00567272_00571417 NA non-coding upstream 58846 566929 ~ 571768 (+)
G378322 NA non-coding upstream 61332 565996 ~ 566341 (+)
G378300 NA non-coding upstream 134996 488802 ~ 492677 (+)
G378208 NA non-coding upstream 307551 318162 ~ 320122 (+)
G378213 NA non-coding upstream 310141 317330 ~ 317532 (+)
G378325 NA non-coding downstream 6509 637018 ~ 637549 (+)
G378327 NA non-coding downstream 19303 649812 ~ 650154 (+)
G378350 NA non-coding downstream 121620 752129 ~ 752425 (+)
G378351 NA non-coding downstream 123000 753509 ~ 753729 (+)
G378352 NA non-coding downstream 123483 753992 ~ 754221 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 211350 412601 ~ 416323 (+)
G378108 NA other upstream 614178 11415 ~ 15229 (+)
G378343 NA other downstream 263999 881526 ~ 896717 (+)

Expression


Co-expression Network