CI01000186_00652978_00654267


Basic Information

Item Value
gene id CI01000186_00652978_00654267
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 652891 ~ 654900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00652978_00654267.mRNA
GTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAAACAAACTGGATCTCTGACCATCACAAACATCACAATGAAACATGTTGGAGATTATAAACTACAGACCAACTATAAGAGGGATTATTTCAGTCTCTCTGTCATTGTGTCAGTGAAGGAGGGAGATTCAGTCACTCTTGACTCTCCTCTTACTAAAATGAAGGATGATGATTGGATTCAGTGGAGGTTTGGAGATGGAAACACTATAATAGTTGAAATCAATAAACGGTTCGACAGAATCACTGTATATGATGATGTTCTTGATGGGAGATTCCGAGACAGACTGAAGCTGGACAAACAAACTGGATCTCTGACCATCACAAACATCACAATGAAACACACTGGAGAATATCAACTAGAGATCGACATTTTCAATTCTTTTTTTATTTATCTCAGTGTCTACGCTCGTCTGCCTGTTCCTGTCATCAGCAGCAACTCTTCACAATGTTCTTCATCATCATCATCATATTGTTCATTGGTGTGTTCAGTGGTGAATGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCCACCAGACTCAACATCTGGACATCACTCAACTCTGTCACACATGTTCAGACTCTGTCCACTGTTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCATTATTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACGAGATCAAGCACAGATTCACACATCAGGTACATGATTGATGATGTCATTTCTCACACACTGATTCAGCATATATTAATATTTGTGAGATTTATTCATTTATGGCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTCAGGAAGTGCTTAAATCTAAAGCAGAACGCTGAACTTTAAAGATTCTTCAAGTGTGTTTTTGTCATA

Function

NR:

description
Zgc:171887 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00652978_00654267.mRNA True 1434 mRNA 0.26 5 652891 654900

Neighbor

gene id symbol gene type direction distance location
CI01000186_00630683_00632213 CROCC coding upstream 20664 630683 ~ 632227 (+)
CI01000186_00627673_00630509 CROCC coding upstream 22382 627673 ~ 630509 (+)
CI01000186_00620849_00622738 CROCC coding upstream 30153 620849 ~ 622738 (+)
CI01000186_00611336_00614260 NA coding upstream 38311 611336 ~ 614580 (+)
CI01000186_00606096_00608919 TMEM240B coding upstream 43693 606096 ~ 609198 (+)
CI01000186_00659009_00660385 MRPL20 coding downstream 3806 658706 ~ 660444 (+)
CI01000186_00661361_00666431 ATAD3A.S, ATAD3, ATAD3A.L, ATAD3B, ATAD3A coding downstream 6132 661032 ~ 666460 (+)
CI01000186_00676085_00686938 FBXO42 coding downstream 20657 675557 ~ 687650 (+)
CI01000186_00692336_00696891 NA coding downstream 37358 692258 ~ 697286 (+)
CI01000186_00697638_00721963 SPEN coding downstream 42683 697583 ~ 721963 (+)
G378327 NA non-coding upstream 2737 649812 ~ 650154 (+)
G378325 NA non-coding upstream 15342 637018 ~ 637549 (+)
CI01000186_00567272_00571417 NA non-coding upstream 84064 566929 ~ 571768 (+)
G378322 NA non-coding upstream 86550 565996 ~ 566341 (+)
G378300 NA non-coding upstream 160214 488802 ~ 492677 (+)
G378350 NA non-coding downstream 97229 752129 ~ 752425 (+)
G378351 NA non-coding downstream 98609 753509 ~ 753729 (+)
G378352 NA non-coding downstream 99092 753992 ~ 754221 (+)
G378290 NA non-coding downstream 100460 755360 ~ 799355 (+)
G378341 NA non-coding downstream 172606 827506 ~ 853304 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 236568 412601 ~ 416323 (+)
G378108 NA other upstream 639396 11415 ~ 15229 (+)
G378343 NA other downstream 239608 881526 ~ 896717 (+)

Expression


Co-expression Network