CI01000186_00676085_00686938 (FBXO42)


Basic Information

Item Value
gene id CI01000186_00676085_00686938
gene name FBXO42
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 675557 ~ 687650 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00676085_00686938.mRNA
TCATAAATGCCTTGCTTTTTAAAGAGATTATTGCAGAAGCACTTAAAAAAATGAAAGTGTAAAAAAGTTATAAAAGTCTAAGTTTACTGTAAAGCAAATGTACTGAACTAAACATTTTATGTTATTCAAAATATATATTTTATAAAATAATTTGGACTTTAGAAATGCTAGAAAATCAAAGCCTGTCTGACCAAATTTGAAGTTGATATCTCAAATGTACCGTTTCCATGGTAACGCAATTTCAAAAATTTTCGGTTTTCACAGGATGAATTTATGATGATTACTAAAATATGTGATAGTGGAAAAGGCAATTAAAAGCAGTTTTAAATGGTTCCCAATCCTAAAACCTTGGATTATTTCCAGGTGCGGACGATCAGTCACATGACCTCTGACGTTTCCCCTCAGATCCGCAGACAGACAGACGGCGTCATGTCTCGCTGCTCAGACGGTGAAGACAGCTGCCTGGTTGCCATGGACACCGAGGAGGGCGGGGCTCCGGCGGGCGGGGGCGGGGCCAGCGCTCACAGCATGGGCGAGCTGCCGGAGGAAGTGCTGGAGTACATCCTGTCCTTCCTGTCGCCCTACCAGGAGCACAAGACGGCCGCGCTGGTGTGCAAACAGTGGTACCGCCTCATCAAAGGTGTGGCGTATCAGTGTTACCATGGTTTCCTGCGGGCCGTTCAGGAGGGAAACATCCAGTGGGAGAGTCGCACCTATCCGTATCCTGGAACACCCATAACACAACGCTTCTCACACAGTGCGTGTTACTACGACTCCAACCAGTCGATGTACGTGTTCGGCGGCTGCACTCAGAGCAGCTGTAACGCGGCCTTCAACGACCTGTGGCGTCTGGACCTCAACAGCAAAGAGTGGATCCGGCCGCTGGCGTCAGGCTCGTACCCGTCGCCCAAAGCCGGAGCCACGCTGGTCATGTACAGGGATCTGCTGGTGCTGTTCGGCGGCTGGACGCGGCCCAGTCCGTACCCGCTGCACCAGCCCGAGAGGTTCTTCGACGAGATCCACACCTACTCGCCCTCCAAGAACTGGTGGAACTGCATCGTGACGACTCACGGGCCGCCGCCCATGGCAGGCCACTCGTCCTCGGTGATCGGCAGCACCATGGTGGTGTTCGGAGGCTCTCTGGGCGCGCGGCAGATGAGTAACGAGGTGTGGCTTCTGGATCTGGAGCAGTGGTCCTGGTCCAAACCCGCCGTCAGTGGCCCGTCTCCTCACCCGCGCGGAGGCCAGTCTCAGATCGTGATCGACAGCGAGACGCTGCTGATTCTGGGCGGCTGCGGCGGGCCCAACGCTCTGCTGAAGGACGCCTGGCTGCTGCACATGAGCGCCTCCAGCTGGACATGGCAGCAGCTGCGGGTGGAGAACGAGGATCACGGCGCGCCGGAGCTCTGGTGTCATCCGGCCTGCAAGGCGCCGTCGGGTCGAGCTCCTCTCAGCCCGAGTCTCAACTCTCGGCCATCCCCCATCAGCTCTACACCCGCCCCTCTGGGCCCGGACCCGCCCTCTCTGCGCTCGCAGTCTCCGGTGCGCAGCGGCGCGGCAGGCGTGGTGCTGGGCGCGGTCGAGGAGGCGCCCTGTGTGAACGGTCGCTGGGGAACCCTGCGGCCGAGAGCGTCGGCTCGAGCGCGGGACGGCAGTCCGTCGTCATCGCAGCAGCAGTCGCCCTCACGAGGTCCCGACAGCCCACCGCTGCTCAATGGCTCCTCGCCGTCCCCCCGCACCAGCCCCGTCCAGGCGGCGTCCCCGCCCACGCGGCCACACGCACCCACAGACTACAGCTGGGACGCCGATCCGCTCAGTTCCAACGGGCTGCACACGCCTCCGCAGGCCGCGTCGCCGCGCACCCCTCCGGGCGCCGTTTCTCCCGCCGCCCTGCGCCGAGGTCTGGAGGCCGTCAAAGCCTCGTCGTCGCTGCCATCCTCGTCCTCACAGTCCCAGCCTGCCGCTTCCGCGTCTGGCGGTACCCCTCCCGCCTCCTCCAGCCCACCGCAAGCCGCAGCGGCCGACGGACACTCCATCCCGCCGATCGCGCGCCGGCTTGGCCACCACCCGCCGCAGAGCCTGAACGTGGGCAAGCCGCTGTACCAGTCTCTCAACTGCAAACCCATGCAGATGTACCTGCTGGACATTTCTCGTGCCAAGTCTGACGGCGTGGTGTCATGGAAGGTGTATGGGAGCGGCGGTGCGCCCAGCGCCGTCACGGGACCGCCGGAGACCAGCCTGCACACGGTGGTTCAGGGGCGCGGAGAGCTCATCATCTTCGGCGGCCTCATGGACAAAAAGCAGAACGTCAAATATTACCCAAAAACCAACGCCTTGTACTTCGTCCGTGCGAAGAGCACGGACGGCGTCCGAGGCCTGCAGAAGGGGCTGACGGCGGCGCTGCTGTACCAGGGCCTGATGAACGGGGTGCGGCTCGGGTTCTACTCCTACACGCAGGCCTCGGGACTCACGGACGCCCCGGGAGGGAGTCTGATCGCAGGGGCCGCAGCAGGAGCTCTGGGGGCGTTCATCGCCTCGCCCGCGTATCTGGTGAAGACGCAGCTGCAGGCGCAGACGGTGGCAGCCATCGCTGTAGGACACCAGCACAACCATCAGGGCGTGTCGAGCGCGTTCCTGTCCATCTACCGCCGTGAGGGAGTGTTGGGTCTGTGGCGGGGGGTGAACGGGGCCGTGCCGAGGGTCACGGTGGGGTCAGCAGCTCAACTGGCCACGTTCAGCTCGGCTAAAGATTGGGTCACACGCGCACAGTGGTTCAGTCCTCACAGCTGCCTCACCGCTCTCATCGCCGCCATGATCAGCGGAGTCGCCGTGACGATCACCATGACGCCGTTTGATGTCATCAGCACACGACTGTACAACCAACCAGTGGACGAGTTTAAAAGGGGCCGTCTGTACAGCGGGTTTGTGGACTGTCTGATGAAGGTTTGCGCTACTGAAGGGATTGTGGGTCTGTATAAAGGAATGACGCCGGTGTTTGTGCGTCTGGCTCCTCATACGGTTCTCAGTATGCTCATATGGGACGTCCTGAGACAGCGAGCACTGCTCTACACGCACTGACACTCCAGAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGATGCTGGAGGATCCTCTGAACGCTTGTGCTTCATCACATACAGATTCATCCAGATGCTTCAGCATGAAATGACTCTTAATGCAGTTGAAGAGGATCATGGGTTTTACCTCACCAGTGTGTCTTATCTCTGATATAACTGTAAAGACTCTTTGTATTTTTATTAATCAGTTGATTAAAGTTTTTACTGACTGACTTCAGTGTGTCTGTGATTATTAGTGCAGCTTCAGAACACAAATAACGACACCAGAGACTTCAGTTCATGTCTATATCTTGAGCTCCGAGGTCAGAATTTGCAAATGTTTTTCATCTGAACCTTTTTTATCTAAAATACTTACATCCTCTTGAGAGTTTAAGTGAATACTTCAATCATCTGTCGACACATTCGCACGTGCACGGTTCTGATGTCGGTTAATGTCACGTGACATGCAGCGAAACATAAAGTGTTGCATCTTTTTAGTAATTGTTTTTAATATAAAATTGTTCATTTGTTGTAATTTTGCATTTTTATGGTTTCATTTATAATTATTTTCATCAACTCACGACTCTAGCGGCTGCCCAGTTCCAGAAACACGGTGTTAAAATACCGGTAAAATATGACAAAAGAAACTTTTAGGCATTATACTTAAGTTTATAATCTACAATGTTTCTCTTCTAGGA

Function

symbol description
fbxo42 Orthologous to human FBXO42 (F-box protein 42).

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00676085_00686938.mRNA True 3790 mRNA 0.56 14 675557 687650

Neighbor

gene id symbol gene type direction distance location
CI01000186_00661361_00666431 ATAD3A.S, ATAD3, ATAD3A.L, ATAD3B, ATAD3A coding upstream 9097 661032 ~ 666460 (+)
CI01000186_00659009_00660385 MRPL20 coding upstream 15113 658706 ~ 660444 (+)
CI01000186_00652978_00654267 NA coding upstream 20657 652891 ~ 654900 (+)
CI01000186_00630683_00632213 CROCC coding upstream 43330 630683 ~ 632227 (+)
CI01000186_00627673_00630509 CROCC coding upstream 45048 627673 ~ 630509 (+)
CI01000186_00692336_00696891 NA coding downstream 4608 692258 ~ 697286 (+)
CI01000186_00697638_00721963 SPEN coding downstream 9933 697583 ~ 721963 (+)
CI01000186_00773514_00774851 NA coding downstream 85672 773322 ~ 774962 (+)
CI01000186_00796544_00798374 NA coding downstream 108894 796544 ~ 798809 (+)
CI01000186_00941016_00950379 NA coding downstream 251889 939539 ~ 950529 (+)
G378327 NA non-coding upstream 25403 649812 ~ 650154 (+)
G378325 NA non-coding upstream 38008 637018 ~ 637549 (+)
CI01000186_00567272_00571417 NA non-coding upstream 106730 566929 ~ 571768 (+)
G378322 NA non-coding upstream 109216 565996 ~ 566341 (+)
G378300 NA non-coding upstream 182880 488802 ~ 492677 (+)
G378350 NA non-coding downstream 64479 752129 ~ 752425 (+)
G378351 NA non-coding downstream 65859 753509 ~ 753729 (+)
G378352 NA non-coding downstream 66342 753992 ~ 754221 (+)
G378290 NA non-coding downstream 67710 755360 ~ 799355 (+)
G378341 NA non-coding downstream 139856 827506 ~ 853304 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 259234 412601 ~ 416323 (+)
G378108 NA other upstream 662062 11415 ~ 15229 (+)
G378343 NA other downstream 206858 881526 ~ 896717 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020650 fbxo42 coding NC_007133.7 CM002906.2 191931 ~ 193234 (-)
striped catfish (Pangasianodon hypophthalmus) G300136 fbxo42 unknown NC_047614.1 CM018560.1 863337 ~ 865040 (-)