CI01000186_00749734_00761177 (PRKAR2A, SLC25A20, PRKAR2AB)


Basic Information

Item Value
gene id CI01000186_00749734_00761177
gene name PRKAR2A, SLC25A20, PRKAR2AB
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 749543 ~ 761177 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00749734_00761177.mRNA
ATGAGCGTGGAGGTTCCGGCGGGTCTGACCGACCTGCTGAAGGGATACACGCTGGAGGTGTTGAAGCAGAGGCCCGCGGACCTGCTGGAGTTCGCGGTGCAGTACTTCACCTGTCTGAGGGAGCGGCGGAGCTCCACCCGCGGCAGCAGCAGCCGCTCCCCGTCGTGCTGTTGTGTGAGTGATGGTGATAGTGAGTGTGTGAGACACTGTTCCTCAGTGTGTGCGGAGGCTTATAACCCCGATGAAGATGAAGACGAGGGCAGTGAGTCGCGGGTGATTCACCATAAAACGGAGGCACAGCGTCAGCGTCTGCAGGAGGCCTGCAAGGACATACTGCTGTTCAAGACGCTGGAGCAGGATCAGTTCGCAGAGGTGTTAGACAGCATGTTTGAGGTGTTGGTCAAACCGCACGAGTGCATCATCAATCAGGGGGATGATGGCGATAACTTCTACGTCATCGAGAGGGGTGTGTTTGATATCCTGATTCAGAAGGACGGCGTCAGCCGCTGTGTGGGTAGCTATGATAATAAAGGCAGCTTCGGGGAACTCGCCCTCATGTACAACACGCCGCGCGCCGCCACCATCAGGGCCGCTCAGGAGGGGGCGCTGTGGGCGCTGGACAGAGCCACGTTCCACAGACTCATAGTGAAGAATAATGCCAAGAAGAGGAAGATGTACGAGCGCTTCATCGAGAGCGTGCCGCTGCTGAAGTCCCTGCAGCTCTCCGAGCGCATGAAGATCGTCGACGTCCTGGGGATGAAGAGCTTCAGAGACGGAGAGCTGATCATACGGCAGGGCGATTCGGCCGACTGCTTCTACATCGTGGAGTCTGGAGAAGTCCGGATCATGATCAGGAGCAGAACTAACGCAGGTCAGAGGTCAAACCAGGAGGTGGAGGTGGCGCGCTGCACGCGGGGCCAGTACTTCGGCGAGCTGGCGCTGGTCACCAATAAACCCAGAGCGGCGTCAGTGTACGCGGCAGGAGACACCAAGTGTTTAGCTGTACGGCGCAGCTCTCGTATTCAGTGTCGCGACTCTCCGTGGGTTCAGTGGCCTTCGGAAAAAATTATTAACACTCTAGAGGCTCAAGGCATTCCTCTCAACAGCAACTTGTCGAAAGACGATCTTCCCCTTTTGGCTTCTAATACCCTGGACGGCTCCTTAGTTACACCTGCGAATCCCCTTCCAACATCTCCAACACCGTCAGCTCAGCCCAAGCTAGCCGGTAGGAAAACGTACAGCCAAGTCGTCTTTTCCCAGAGCAGCCAAACGACTATACCTATATCATCATCTCCTCCTAGTCATGGATCAGCGGATATTAATAGCCAACTCATCCAGGTCATTCATAGCTTTTCAGAGACAGTTAAAGGCCTTGATTCTAGATTAAAAAATGTTGAAAGCGCATCTGCCAAATGCGCTCCAGGATTTTCTTCTGGCTCCTCCCCGGCTCTCACTCCCCTATTCAGACCATGTGATCTCTCAGCTGTTCCTTCTACATCTTCTGCTACAACAGCAGCTGCTCTTCCTATGGCTCAGATACCAGGATCAGACACACGTACCGTCGTGCCTGCACAAACTTCCGTTAGGCGCTTTGTTCCACCGGCCGCTGTTACCGTATCCCCTCTACTAAGATCAAACATCATCCAAGATTCAGTCAAAATGCAAGCTTCTTTACCTAACGAGAAACTTCTTAAAATCAGATCCTTCATGGAGTCTTTTGTCTCTTCGCGTTCTGTCTCTAAACGTGACATGCTCTCTCTCCCCGGCCACTTCAATTTCGCTATGAGCATTATTCCCCAAGGTAGAGCATTTATTTCCCGTCTGCTTACCCTAGCTCACTCAGTGGTTAACTTAAGCGATACTGTCGTCTTAGATGAAGGGTGCTTGTCTGATCTCAGTTTCTGGAACAAACTGCTTAACAGTTGGAACGGCATATCTTTTTTCTATAATGACGTTCCCGAATCGTCAGTAGCTTTGGATCTATTCACTGATGCCGCTCCTTCTATTGGCTTTGGGGGATTTTTTCAAGGGTTATGTTTTTTCTCCTCTCCATCTATATGGCTATTACTTAAAGGCTTTACAAAAGCCGCACCTGAAGTTTCTGACCAACGCCTCCTCATCACGATGCCTATTTTAGAAAGGTTGGTTGACTCCCTGCGCCATGGTTCATTTTCCGCTTACATTAACATTCTCTTGGAAGCCGCGTTTCTAGCAGCTTTCTTCGGCTTCATGCGCCCAGTTTTACTGAAGCATTCTAAGACTGACTCCTTAAGCTCAGTGATCGACGTGCAGGCGTTCGAGCGTCTGTTGGGTTCCTGTAAGCAGATCCTGAAGAGGAACATCACACAGTACGAGCAGCAGCTGGTGGCCGTGTTCGGATCCAGCGTCGACCTCAAACACTGACCTTCACCAGCCTCCAATGCTTTACAGTTCAGTTACGCTCTACGTACAACATGCTCTCGATTACAACAGAAAATACGGCACATTTATATATTCTCACTTTCCATAAAAGCATCTGCAAATGATGCAGCTGATAGTTCAACTCATCTCGTGATCCTGTATGGACAGTAAACAGTACGAGACGCAACAATAAA
>TU432835
TGAATTCACTACAGAATCTAATAAATTTGACTCTACTCGAGACTTAATGTTTTCTGATTTAAGTTTTTCACCTCATTTCTTTTCAGTTTTACTGAAGCATTCTAAGACTGACTCCTTAAGCTCAGGTATAACTATCACAGTATCAAGAATTAACAATAATTACTGCCCCTTTAATTCTATGGTTCGCTATCTCAAAGCTCGTCC

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).
prkar2ab Predicted to enable cAMP binding activity; cAMP-dependent protein kinase inhibitor activity; and protein kinase A catalytic subunit binding activity. Predicted to be involved in negative regulation of cAMP-dependent protein kinase activity. Predicted to act upstream of or within regulation of protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be part of cAMP-dependent protein kinase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human PRKAR2A (protein kinase cAMP-dependent type II regulatory subunit alpha).
prkar2a Enables cAMP-dependent protein kinase inhibitor activity; enzyme binding activity; and protein domain specific binding activity. Involved in negative regulation of cAMP-dependent protein kinase activity. Located in centrosome; cytoplasm; and plasma membrane raft. Part of cAMP-dependent protein kinase complex and nucleotide-activated protein kinase complex. Colocalizes with axoneme. Implicated in congestive heart failure.

NR:

description
Protein kinase, cAMP-dependent, regulatory, type II, alpha A

GO:

id name namespace
GO:0030552 cAMP binding molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00749734_00761177.mRNA False 2594 mRNA 0.51 13 749543 761177
TU432835 True 204 lncRNA 0.33 1 751210 751413

Neighbor

gene id symbol gene type direction distance location
CI01000186_00723511_00725818 NA coding downstream 23622 723145 ~ 725921 (-)
CI01000186_00656484_00658437 SDHB coding downstream 90929 656293 ~ 658614 (-)
CI01000186_00640328_00644798 MFAP2 coding downstream 101357 639172 ~ 648186 (-)
CI01000186_00588218_00590230 ORA4 coding downstream 158739 588218 ~ 590804 (-)
CI01000186_00525649_00532282 CAPZB, CAPZB.L coding downstream 217190 525556 ~ 532353 (-)
CI01000186_00763236_00766749 SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S coding upstream 1905 763082 ~ 766749 (-)
CI01000186_00768176_00773034 NA coding upstream 6504 767681 ~ 773102 (-)
CI01000186_00777653_00779924 GDI1 coding upstream 15543 776720 ~ 782157 (-)
CI01000186_00799178_00799351 RHOA coding upstream 37768 798930 ~ 800937 (-)
CI01000186_00804745_00805695 ORA1 coding upstream 43467 804644 ~ 805753 (-)
G378623 NA non-coding downstream 7476 741788 ~ 742067 (-)
G378622 NA non-coding downstream 10920 738340 ~ 738623 (-)
G378616 NA non-coding downstream 21627 727696 ~ 727916 (-)
G378604 NA non-coding downstream 45878 702288 ~ 703665 (-)
G378634 NA non-coding upstream 46994 808171 ~ 808400 (-)
G378670 NA non-coding upstream 181112 942289 ~ 946294 (-)
CI01000186_00485805_00522951 CELSR2 other downstream 261060 485796 ~ 523767 (-)
G378509 NA other downstream 352788 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 382552 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 501459 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 525779 215399 ~ 223764 (-)
G378631 NA non-coding upstream 8480 759893 ~ 760214 (-)

Expression


Co-expression Network