CI01000186_00763236_00766749 (SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S)


Basic Information

Item Value
gene id CI01000186_00763236_00766749
gene name SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 763082 ~ 766749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00763236_00766749.mRNA
GTGCGACTGCAGACGCAGCCCAAACCTCGTCCAGGTGAATCAGCGCTTTATGGTGGGACGTTCGACTGCTTCAAGAAAACCTTGGCGAAAGAGGGTTTGCGCGGGCTCTATAAGGGCATGGCGGCACCCATCATCGGAGTCACGCCCATGTTCGCCGTCTGCTTCTTCGGCTTCGGACTTGGAAAGAAACTGCAGCAGAAAACACCAGACGACGTTCTGACGTATCCGCAGCTGTTCGCGGCCGGTATGCTGTCAGGTGTTTTCACCACGGCCATCATGGCTCCAGGAGAGAGAATCAAATGCCTCCTGCAGATCCAGCAGGCGTCCGGCGAGGTGAAGTACGCTGGGCCGATGGACTGCGTCAAGCAGCTGTACAGAGAGAACGGCATCCGCAGCATCTATAAAGGAACGGCTCTGACGCTCATGAGAGATGTGCCGGCCAGTGGAATGTACTTCATGACGTACGAGTGGCTGAAGTACTCGCTCACGCCGGAGGGCAAGAGTCCGACGGAGCTCAGCGTTCCCAGCATTCTGTTTGCCGGCGGGATGGCAGGGATCTTCAACTGGGCCGTGGCGATTCCTCCCGACGTGCTGAAGTCTCGTTTCCAGACCGCTCCGGAGGGCAAATATCCCAACGGCTTCCGGGACGTCCTGAGAGAGCTGGTTCGGGAGGAGGGCATTGGCTCGCTCTACAAAGGCTTTAATGCTGTGATGCTCCGAGCGTTTCCGGCTAACGCGGTACGACAGACTCCATAACGCTCCCATGAACACGTACAGGGTCACATGAGGGTCAGATTCACTCCAAATCCAGATTTTGAGCCCAACTCTCATGACTGTAATGCATCTTGACATCTTCTCAATTCTCATAGATTTCTGTCATTGCAACACTTTTATTTAAATTACCATTAAA

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

GO:

id name namespace
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00763236_00766749.mRNA True 910 mRNA 0.55 7 763082 766749

Neighbor

gene id symbol gene type direction distance location
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding downstream 1905 749543 ~ 761177 (-)
CI01000186_00723511_00725818 NA coding downstream 37161 723145 ~ 725921 (-)
CI01000186_00656484_00658437 SDHB coding downstream 104468 656293 ~ 658614 (-)
CI01000186_00640328_00644798 MFAP2 coding downstream 114896 639172 ~ 648186 (-)
CI01000186_00588218_00590230 ORA4 coding downstream 172278 588218 ~ 590804 (-)
CI01000186_00768176_00773034 NA coding upstream 932 767681 ~ 773102 (-)
CI01000186_00777653_00779924 GDI1 coding upstream 9971 776720 ~ 782157 (-)
CI01000186_00799178_00799351 RHOA coding upstream 32196 798930 ~ 800937 (-)
CI01000186_00804745_00805695 ORA1 coding upstream 37895 804644 ~ 805753 (-)
CI01000186_00815815_00829935 MMYHEMB1, MMYHL2, MMYHL1 coding upstream 48983 815732 ~ 831302 (-)
G378631 NA non-coding downstream 2868 759893 ~ 760214 (-)
G378623 NA non-coding downstream 21015 741788 ~ 742067 (-)
G378622 NA non-coding downstream 24459 738340 ~ 738623 (-)
G378616 NA non-coding downstream 35166 727696 ~ 727916 (-)
G378634 NA non-coding upstream 41422 808171 ~ 808400 (-)
G378670 NA non-coding upstream 175540 942289 ~ 946294 (-)
CI01000186_00485805_00522951 CELSR2 other downstream 274599 485796 ~ 523767 (-)
G378509 NA other downstream 366327 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 396091 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 514998 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 539318 215399 ~ 223764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017359 slc25a20 coding CM030122.1 CM030122.1 54572425 ~ 54578093 (-)