CI01000186_00804745_00805695 (ORA1)


Basic Information

Item Value
gene id CI01000186_00804745_00805695
gene name ORA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 804644 ~ 805753 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000186_00804745_00805695.mRNA
AGAAAGCCGGCGTTCACACAGTCGCCCTGCTGCGTCTCTGAATCTCTGAAGCGGCTCTATGGACCTCTGCGTCACCATCAAAGGGGTCTCGTTCCTCCTGCAGGCAGGCCTGGGGATCCTGGCCAACGCGCTGGTCCTGCTGGCCTACGCCCACATCCTGCTGACCGAGGCGCAGCTGCAGCCCGTGGACGCCATCCTGTGCCACCTGGCCTTCGCCGACCTGCTGCTGCTGCTGACGCGCGGCGTCCCGCAGACCATGACCGTCTTCGGCATGAAGAACCTGCTGGACGACGCCGGCTGCAAGGTGGTCATCTACACGTACCGCATCGCCCGCGCGCTGTCCGTCTGCATCACCTGCATGCTGAGCGTCTTCCAGGCGGTGACCGTCGCACCTGCGGCCGGGCCGCTCCTGTCCCGCTTGAAGGCCCGGCTCCCGCAGCTGCTCGTCCCCACCTTCGCCGTGCTGTGGTTCATCAACATGGCCGTCTGCATCGCCGCGCCGTTCTTCTCCGTGGCCCCTCGCAACGGCACCGTCCCCCCGTTCACGCTCAACCTGGGCTTCTGCCACGTGGACTTCCGCGATAACCTGTCCTACGTGATTAACGGGGTGGCCGTGTCGGTGCGCGACTTCGCGTTCGTGGGTGTGATGCTGGGCTCCAGCGGGTACATCCTCGTCCTGCTTCACCGCCACAGCAGGAAGGTGCGGGGCATCCGCCGCTCGCAGGGTGCCTCTATGGAAACACGGGCGGCCAAGACTGTGGTGATGCTGGTGGTTCTGTACACGGTGTTTTTCGGCATTGATAACGTCATCTGGATCTACATGCTGACGGTGGCGCAGGTGCCGCCCGTGGTGGCCGACATGAGGGTGTTTTTCTCCTCGTGCTACGCCTCTCTCAGTCCGTTCCTCATCATCTCCTCTAATAAGAAGGTCAAAGCGAGGATGGTGTGTGCGACCTCGGACCAGGAGCGGCAAGCAGAGGACAACAAGCAGTCGAATGTCAAAAGCTGAGCTCCAAGTCTTAGTGATGCTAATAGTGCCGCAGACGTGGCTTACAAACTCTGTAGTATACTGTCTGTGTTTGAATGTGAAAACTTGATGCACTTAATAAA

Function

symbol description
ora1 Enables monocarboxylic acid binding activity; pheromone binding activity; and tyrosine binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of smell. Located in plasma membrane. Is expressed in female organism; male organism; olfactory epithelium; and olfactory rosette. Orthologous to several human genes including VN1R1 (vomeronasal 1 receptor 1).

NR:

description
V1r pheromone receptor-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04614 V1R; vomeronasal 1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000186_00804745_00805695.mRNA True 1110 mRNA 0.61 1 804644 805753

Neighbor

gene id symbol gene type direction distance location
CI01000186_00799178_00799351 RHOA coding downstream 5293 798930 ~ 800937 (-)
CI01000186_00777653_00779924 GDI1 coding downstream 22487 776720 ~ 782157 (-)
CI01000186_00768176_00773034 NA coding downstream 31542 767681 ~ 773102 (-)
CI01000186_00763236_00766749 SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S coding downstream 37895 763082 ~ 766749 (-)
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding downstream 43467 749543 ~ 761177 (-)
CI01000186_00815815_00829935 MMYHEMB1, MMYHL2, MMYHL1 coding upstream 9979 815732 ~ 831302 (-)
CI01000186_00842940_00858572 MYHZ1.1 coding upstream 36524 842277 ~ 858696 (-)
CI01000186_00873286_00934953 MMYHEMB1, MYHB, MYHM86-1 coding upstream 67378 873131 ~ 934953 (-)
CI01000186_00956103_00957823 NA coding upstream 150350 956103 ~ 957823 (-)
G378631 NA non-coding downstream 44430 759893 ~ 760214 (-)
G378623 NA non-coding downstream 62577 741788 ~ 742067 (-)
G378622 NA non-coding downstream 66021 738340 ~ 738623 (-)
G378634 NA non-coding upstream 2418 808171 ~ 808400 (-)
G378670 NA non-coding upstream 136536 942289 ~ 946294 (-)
CI01000186_00485805_00522951 CELSR2 other downstream 316161 485796 ~ 523767 (-)
G378509 NA other downstream 407889 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 437653 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 556560 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 580880 215399 ~ 223764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020651 ora1 coding NC_007133.7 CM002906.2 208644 ~ 209741 (-)