G378108


Basic Information

Item Value
gene id G378108
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 11415 ~ 15229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432149
AAACATCAGCTACTCGAGTCAACCAGAACGACTGACACACTTAAATGAAGCACAACAGTCAAACGCTTGTTTTTACACATACAAATTTATTTGTCATAATTCAGGCTCTACTCCTTCTTGGCAGCAGCTTTCCTCATGGCAGCCAGAATGTTGCTGAGCTCTTCCCTCTTTCTCTTGGCACGGATGTGAGTTCCCACCTTTTCTTGATGAACTTGAGGGCACGTTTGTCCTTGGACACCTTCAGCAACTCCATGGCACGCCTCTCGTAGGGCGCGAAACCGCACACCTCACGGATCATGTCGCGCACAAACTTGGTGTGCTTGGTCAGACGCCCTCTCCTGCGGCTGTGCTTGGGCTTCGTAACGTTTTTGGTCACTGGATGGCCTTTGTTAAGGCCAACCGCCATAGGATACCTGATGGCCATCTCTGCGTTTTGCTAATGGCGTCCAAACCGGAA
>TU432150
AAACATCAGCTACTCGAGTCAACCAGAACGACTGACACACTTAAATGAAGCACAACAGTCAAACGCTTGTTTTTACACATACAAATTTATTTGTCATAATTCAGGCTCTACTCCTTCTTGGCAGCAGCTTTCCTCATGGCAGCCAGAATGTTGCTGAGCTCTTCCCTCTTTCTCTTGGCACGGATGTGAGTTCCCACCCTTTTCTTGATGAACTTGAGGGCACGTTTGTCCTTGGACACCTTCAGCAACTCCATGGCACGCCTCTCGTAGGGCGCGAAACCGCACACCTCACGGATCATGTCGCGCACAAACTTGGTGTGCTTGGTCAGACGCTGAAACGCAAAAAATATGTTACGTTAAATACGATTACACTGGTATAATAAGGTGTAA
>TU432151
AAACATCAGCTACTCGAGTCAACCAGAACGACTGACACACTTAAATGAAGCACAACAGTCAAACGCTTGTTTTTACACATACAAATTTATTTGTCATAATTCAGGCTCTACTCCTTCTTGGCAGCAGCTTTCCTCATGGCAGCCAGAATGTTGCTGAGCTCTTCCCTCTTTCTCTTGGCACGGATGTGAGTTCCCACCTTTTCTTGATGAACTTGAGGGCACGTTTGTCCTTGGACACCTTCAGCAACTCCATGGCACGCCTCTCGTAGGGCGCGAAACCGCACACCTCACGGATCATGTCGCGCACAAACTTGGTGTGCTTGGTCAGACGCCTCTCCTGCGGCTGTGCTTGGGCTTCGTAACGTTTTTGGTCACTGGATGGCCTTTGTTAAGGCCAACCGCCATAGGATACCTGATGGCCATCTCTGTGGAGAGCAAATGTGATTAAACATACATGAATACTCTGACACAAGCTGCATGTGTGCTTATGGATTAGACATTAGTGGTCTTTACGAGATCAAAGTCATTAAATACCACCATTTCATGATTAGGGAGAATACAGTTAACATTTTATACACGTTTTGTGTTTAAAGCTTCTAAACTGCAGTTAATTTATAACGAGTGTTTGAGAAGGACTTCACTGCATCTACTCTTGAGTGAAACCCTCCAAAACACACAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU432149 False 457 lncRNA 0.50 4 11415 15229
TU432150 False 390 TUCP 0.46 2 11415 13495
TU432151 True 680 lncRNA 0.45 3 11415 15052

Neighbor

gene id symbol gene type direction distance location
CI01000186_00000433_00010367 LONP1 coding upstream 722 433 ~ 10693 (+)
CI01000186_00016608_00025920 LMNB2 coding downstream 1379 16608 ~ 26754 (+)
CI01000186_00091411_00095100 ING5, ING5A coding downstream 75750 90979 ~ 95538 (+)
CI01000186_00098106_00099994 NA coding downstream 81947 97176 ~ 100163 (+)
CI01000186_00102313_00108968 PAK2 coding downstream 86883 102112 ~ 109867 (+)
CI01000186_00111894_00116331 NA coding downstream 96665 111894 ~ 116838 (+)
G378128 NA non-coding downstream 262 15491 ~ 15968 (+)
G378130 NA non-coding downstream 14267 29496 ~ 29721 (+)
G378131 NA non-coding downstream 15247 30476 ~ 31024 (+)
G378134 NA non-coding downstream 18729 33958 ~ 34226 (+)
G378136 NA non-coding downstream 20212 35441 ~ 35705 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other downstream 396591 412601 ~ 416323 (+)
G378343 NA other downstream 879279 881526 ~ 896717 (+)

Expression


Co-expression Network