Gene
RNA
| Item | Value |
|---|---|
| gene id | G378453 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000186 |
| NCBI id | null |
| chromosome length | 966831 |
| location | 111292 ~ 111496 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU432616 | True | 205 | lncRNA | 0.29 | 1 | 111292 | 111496 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000186_00095947_00097088 | CEP19 | coding | downstream | 14150 | 95645 ~ 97142 (-) |
| CI01000186_00087531_00090364 | NA | coding | downstream | 20801 | 87493 ~ 90491 (-) |
| CI01000186_00039365_00051758 | HRH4 | coding | downstream | 58806 | 39303 ~ 52486 (-) |
| CI01000186_00011522_00015307 | RPL36, RPL36-PS3, RPL36-PS8, GM13611 | coding | downstream | 95985 | 11500 ~ 15307 (-) |
| CI01000186_00144110_00151887 | CAMK1GA | coding | upstream | 32166 | 143662 ~ 151887 (-) |
| CI01000186_00156270_00161766 | NA | coding | upstream | 44687 | 156183 ~ 161766 (-) |
| CI01000186_00165206_00167364 | PPARDB, PPARD, PPARB, PPARDA | coding | upstream | 53546 | 165042 ~ 167459 (-) |
| CI01000186_00175457_00185420 | NA | coding | upstream | 63703 | 175199 ~ 185420 (-) |
| CI01000186_00215443_00223579 | STK38, STK38A, STK38B | coding | upstream | 103903 | 215399 ~ 223764 (-) |
| G378418 | NA | non-coding | downstream | 57608 | 53467 ~ 53684 (-) |
| G378444 | NA | non-coding | downstream | 80306 | 30676 ~ 30986 (-) |
| G378454 | NA | non-coding | upstream | 1168 | 112664 ~ 112887 (-) |
| G378455 | NA | non-coding | upstream | 2872 | 114368 ~ 116870 (-) |
| G378457 | NA | non-coding | upstream | 6300 | 117796 ~ 118319 (-) |
| G378456 | NA | non-coding | upstream | 8245 | 119741 ~ 120168 (-) |
| G378476 | NA | non-coding | upstream | 104286 | 215782 ~ 216043 (-) |
| G378458 | NA | other | upstream | 9186 | 120682 ~ 121425 (-) |
| G378466 | NA | other | upstream | 80674 | 192170 ~ 193760 (-) |
| CI01000186_00240507_00248051 | DENND2DB | other | upstream | 133877 | 240329 ~ 248084 (-) |
| CI01000186_00360860_00361637 | NA | other | upstream | 249414 | 360640 ~ 366991 (-) |
