G378455



Basic Information


Item Value
gene id G378455
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 114368 ~ 116870 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU432618
GCAATTATGGAAGACTAAAAAAATGTATTTATTGTAGCTATTGTGACATTGTGGCACACTTGCAATGTTTTATGAGTGCCATTTATACACAACGCATCCCAATGTTCATACTTTAACTTTTATATGCAATTACTTTTTTACCCTTTGTCTCTTTTTTCATTAGCAAACCGGCCAATCAGGTACTAAATTGTACAACTGACGTATAATGCCACCTGCTCTTAAATATTATTTGCTATATATTAAATTAAATGTCCATATAACTTAAGCCGGCTTGTCTATTCTTTGGCTCATGGATATTAGTAGAAATTTCACATCTGACAACTAGAACAAACTCAACATTTTTACTCTGTGTAACAGGATAGATTTAAGTAGACACCTGATGTAATGGACAAAGTGTTTTCGTAACTTAAGGGGTTTGTTGCAACTGGCTGCACCTTAACCCAGTCGAACAGATTTAACATTTAACCATGTTTTGTGACAGTAAAATCTGTTTTACAAAGAGACCATATCAGTGCTGGTTTTAATGTCTGTCAGTCGTCTTAGTTTGTCTTGTCTTCAGAAGTTTTCCCTTTGGGCACCCGGAAGATGATGGCATGAACGGTGATGGAGAGGAAAAGCATAGTGATGGCCACGTCAGGCCCAAGCGCACCGGCCCACTGACCGACCTCCGCAATGGTGTCCACTTCAAGCCTACAGGCGGCGAGTGCGAAGGCGGCGATGAACTCTGTCAGGAAAGTCCATCGCGGCCTCCATCGAGCGAACAGCACCCTTCCGACTGCACTTACACCTACTATAGCTAAGAAGTAGCCCAGCGATGCATTAAGCCCTGACATGATGTTCAAACAGTGTAGTGCACAGCTAGCT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU432618 True 864 lncRNA 0.42 2 114368 116870

Neighbor


gene id symbol gene type direction distance location
CI01000186_00095947_00097088 CEP19 coding downstream 17226 95645 ~ 97142 (-)
CI01000186_00087531_00090364 NA coding downstream 23877 87493 ~ 90491 (-)
CI01000186_00039365_00051758 HRH4 coding downstream 61882 39303 ~ 52486 (-)
CI01000186_00011522_00015307 RPL36, RPL36-PS3, RPL36-PS8, GM13611 coding downstream 99061 11500 ~ 15307 (-)
CI01000186_00144110_00151887 CAMK1GA coding upstream 26792 143662 ~ 151887 (-)
CI01000186_00156270_00161766 NA coding upstream 39313 156183 ~ 161766 (-)
CI01000186_00165206_00167364 PPARDB, PPARD, PPARB, PPARDA coding upstream 48172 165042 ~ 167459 (-)
CI01000186_00175457_00185420 NA coding upstream 58329 175199 ~ 185420 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding upstream 98529 215399 ~ 223764 (-)
G378454 NA non-coding downstream 1481 112664 ~ 112887 (-)
G378453 NA non-coding downstream 2872 111292 ~ 111496 (-)
G378418 NA non-coding downstream 60684 53467 ~ 53684 (-)
G378444 NA non-coding downstream 83382 30676 ~ 30986 (-)
G378457 NA non-coding upstream 926 117796 ~ 118319 (-)
G378456 NA non-coding upstream 2871 119741 ~ 120168 (-)
G378476 NA non-coding upstream 98912 215782 ~ 216043 (-)
G378399 NA non-coding upstream 120268 240855 ~ 241071 (-)
G378480 NA non-coding upstream 184016 300886 ~ 301234 (-)
G378458 NA other upstream 3812 120682 ~ 121425 (-)
G378466 NA other upstream 75300 192170 ~ 193760 (-)
CI01000186_00240507_00248051 DENND2DB other upstream 128503 240329 ~ 248084 (-)
CI01000186_00360860_00361637 NA other upstream 244040 360640 ~ 366991 (-)

Expression



Co-expression Network