G378456



Basic Information


Item Value
gene id G378456
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 119741 ~ 120168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU432620
ATATATGAAAGGGTTTGTATTCAAATACAGTTATCAATAAAATCAACAAGAGGTTTAATATGTAGGTGTAAATGGATTTATAAAATATGGAGCCACACTGTTTGATGAAAGAAATATATCATGTACAAGAAAGAGCCAGTGGCTTCTGCCGAAATATTCATTTTAGTGTTGATACTTTATATATTTTATATAAATTGTATTTAGAGTGGCAGATTAAATATTACAGTGCAATCTGATGGTGTAATGACCTCTAGTGATGAGTTTGAGGAACTGCAGATGCATTTTACATGCGTTTATAAGACTGATGAAACAGTGAAGTATGTACATGCAATGTTTATAAAAATATAAAATGCTAAATAACATAAAAAATGCTGACACATGTTTAAAGACACACTGAAAGTTTACTGGGAATAAAAATTGTATAACTG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU432620 True 428 lncRNA 0.29 1 119741 120168

Neighbor


gene id symbol gene type direction distance location
CI01000186_00095947_00097088 CEP19 coding downstream 22599 95645 ~ 97142 (-)
CI01000186_00087531_00090364 NA coding downstream 29250 87493 ~ 90491 (-)
CI01000186_00039365_00051758 HRH4 coding downstream 67255 39303 ~ 52486 (-)
CI01000186_00011522_00015307 RPL36, RPL36-PS3, RPL36-PS8, GM13611 coding downstream 104434 11500 ~ 15307 (-)
CI01000186_00144110_00151887 CAMK1GA coding upstream 23494 143662 ~ 151887 (-)
CI01000186_00156270_00161766 NA coding upstream 36015 156183 ~ 161766 (-)
CI01000186_00165206_00167364 PPARDB, PPARD, PPARB, PPARDA coding upstream 44874 165042 ~ 167459 (-)
CI01000186_00175457_00185420 NA coding upstream 55031 175199 ~ 185420 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding upstream 95231 215399 ~ 223764 (-)
G378457 NA non-coding downstream 1422 117796 ~ 118319 (-)
G378455 NA non-coding downstream 2871 114368 ~ 116870 (-)
G378454 NA non-coding downstream 6854 112664 ~ 112887 (-)
G378453 NA non-coding downstream 8245 111292 ~ 111496 (-)
G378418 NA non-coding downstream 66057 53467 ~ 53684 (-)
G378476 NA non-coding upstream 95614 215782 ~ 216043 (-)
G378399 NA non-coding upstream 116970 240855 ~ 241071 (-)
G378480 NA non-coding upstream 180718 300886 ~ 301234 (-)
G378481 NA non-coding upstream 182043 302211 ~ 302489 (-)
G378482 NA non-coding upstream 202361 322529 ~ 322781 (-)
G378458 NA other upstream 514 120682 ~ 121425 (-)
G378466 NA other upstream 72002 192170 ~ 193760 (-)
CI01000186_00240507_00248051 DENND2DB other upstream 125205 240329 ~ 248084 (-)
CI01000186_00360860_00361637 NA other upstream 240742 360640 ~ 366991 (-)

Expression



Co-expression Network