G378466


Basic Information

Item Value
gene id G378466
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 192170 ~ 193760 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432635
CGTATCTTCCTCAGGCATTGGCATGAAAACGGCCAGAGCTACACAGTTTGCAAAGATGGATACTTCCACTCTACGATGTTGATGCAGGCCTTGCGGAAGGGGTTCTTCAGCGTGAGGAAGAGGAGGGATCGCGCAGGCCGCGGGTTTCCACCTGTAGCCTGGAGCTTCTTGAGTTTCTCTCTCTGCTTCCTCTTGAGCGTCTCCTCATCCATGATGAAGGTGCTCATGGGTGCTTCACCGCCACCCTCCATGATCCGATCAGAACCAGAGCAGGAGGCGCAGGAATTCTGGAGATCAGGTACCCGGCTCAATAGTTCAGTGTCTTCAAGTGGTTGCTCTCAAGAGTCAAAAATGAACGTGTCCCCACCATCCGCTCTCTGTCTGTCTGTCCCTGAATCTATTTCTCTCTCTGCTCTTGTTTGGTTAGTACTGCAGCTGTC

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU432635 True 440 TUCP 0.52 2 192170 193760

Neighbor

gene id symbol gene type direction distance location
CI01000186_00175457_00185420 NA coding downstream 6750 175199 ~ 185420 (-)
CI01000186_00165206_00167364 PPARDB, PPARD, PPARB, PPARDA coding downstream 24711 165042 ~ 167459 (-)
CI01000186_00156270_00161766 NA coding downstream 30404 156183 ~ 161766 (-)
CI01000186_00144110_00151887 CAMK1GA coding downstream 40283 143662 ~ 151887 (-)
CI01000186_00095947_00097088 CEP19 coding downstream 95028 95645 ~ 97142 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding upstream 21639 215399 ~ 223764 (-)
CI01000186_00238503_00238674 NA coding upstream 44710 237138 ~ 238674 (-)
CI01000186_00240507_00248051 DENND2DB coding upstream 46569 240329 ~ 248084 (-)
CI01000186_00259516_00260745 NA coding upstream 65656 259416 ~ 261189 (-)
CI01000186_00261713_00270433 CRY1BB coding upstream 67663 261423 ~ 270510 (-)
G378456 NA non-coding downstream 72002 119741 ~ 120168 (-)
G378457 NA non-coding downstream 73851 117796 ~ 118319 (-)
G378455 NA non-coding downstream 75300 114368 ~ 116870 (-)
G378454 NA non-coding downstream 79283 112664 ~ 112887 (-)
G378453 NA non-coding downstream 80674 111292 ~ 111496 (-)
G378476 NA non-coding upstream 22022 215782 ~ 216043 (-)
G378399 NA non-coding upstream 43378 240855 ~ 241071 (-)
G378480 NA non-coding upstream 107126 300886 ~ 301234 (-)
G378481 NA non-coding upstream 108451 302211 ~ 302489 (-)
G378482 NA non-coding upstream 128769 322529 ~ 322781 (-)
G378458 NA other downstream 70745 120682 ~ 121425 (-)
CI01000186_00360860_00361637 NA other upstream 167150 360640 ~ 366991 (-)
G378509 NA other upstream 202498 396258 ~ 396755 (-)
CI01000186_00485805_00522951 CELSR2 other upstream 292036 485796 ~ 523767 (-)

Expression


Co-expression Network