G378399


Basic Information

Item Value
gene id G378399
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 240855 ~ 241071 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432559
CTTTATAAACACATTGGAGTTTGAGATGATAGCAGCACACTAACAACCACAAGAACAATTTAATGGCCAAGCCATGGCAACAAGCCACGGCACCCTAGCGATGTCCTACAGACAGTAACGAGTGTGTGATTTCAGATCGGCGATGAGGAGTCGCTCCTGCCGGCTAAACTGAGGGAGGGGCTGCTGACGGGACTGTCCGCGCGCACACACCACGCCACTACAGACGAGCTGAACCGGCTGGTGTCAGAGGCCTTCCTGTCCGTCTTCATTAAGAGCGTGGGCCATTTCTCAGAACACGTCAAGCGCTGCGGGAACGGCCGCCAGTTCCAGAAGAAGAGCTTCCTGAAGGCTGTGGAGCACAAATCGCACCTGAACTTCGTCAAACTCTTCATCCAGACACAGATGTTTGATCTCTTCATACAGGAAGAGGAAATGCAGCCCAATCCTAATGGGTTCTTTCATCGGAAGGTGTCGGAGTATCACGAGCGGAGGAAGAAGGAGAAGACGAAGGCCGGGTGGGTGCGAGGTGTCGTGGTGTAAGAGCTTCAGAGTGTTCTAGTGTTCATTCACGGTTACGCTTTTCCCAGAAGCATTTTATCAGACAATCAGTGGTGAATATTTAATGCTGTTTATTTGTATTGTTTTAATGTAATAAAATATAAAGTGATACAGATGCTGAGTGAATCTCGTTCAGCTCATATTTCACCTTATTAAAACAACAAAAAATAGGAAACTATATTATAGTATTATACAAATCGAAACCTGTTTTAGGACGTATTTTGCATTGTGACATTATTTTCATGACAATTAAACATTTAATTCCTGAATTCCTGTAATATTTCTGACTGTTTTGTCTTTTTTTAATATTGTCAATGATGATTCTCATTAGTTAACATTATTTAATGAAATTAAAATCAGTTTTTAGCTTATTTTCTGGATTTGTTGTGTGAAATATGAGTCACAAATGTTTTTGTCTAAAATTCACCCACTAATACCAGTTTTAATGAGGATATTATGCAGTTTTACAGTGGTATAAAAATGAACGTAATGGATATATCTAGAACAAAAATATAAAACATGTTTGTAGTCTCCACCAACAAACTCACAGCAGAAAAACAAGCATTAAAACCACTGAAGCAAACACAATATTTAGAGCATCATTTCAAACGGTTGTGTAAATGTTGTACAAACGTTGTGTAAATGTTAGTATGAAGTTTCAGCGCTTCTACACGGTCAGTCCTGTATTTCTGCCTTTAACCCTGAGTGTCGCTGCCCTCTGCTGGAGCGTCAGAGTCCTTCTGTCCCGTGATCAGATGCTCCCGGCGAGCAGCGGCGACGTCTCTGTCGGCGCACGTGGAGGAACGGGCCGGTGATGATGCGACTCGTACAGGTGGTTGCTCTGAATTTGCGCCTGGGCACGCAGATTGATCTTCTGCAGAGAGACAAACACATCTGAGACGCGTTCAACAGGTTTATATCTTCTGATGTGAGATGCCTTACCTTGAAGTCTCGTATGTAGGTGAGGAAGAAGCTGATGAAGGAAAGCGCGAGAGACCACTCGGAAATGGTGCTGATGATGTGCGGCGTGAAACCCTGAAAAACATCGGGATCAGAATCGCGCACCACACACGCAAACGTTGCGGCGGAAAGTTTCACTCACGGGTTCTCCGGGTGTCCAGTGGAGCTTCTTGTTGACTTCGACTCCAGAAAGAGTGCTGTACATGATCACCGACGACACAAACACTGAGAGAATCAAGGAACCAAACACATTCAACACGAAACGCTACGTTTCCCAGCATGCAGCGGGTGAAAGGATACTGCTAATGATGCTCGCCAGCGTCCAGATGCCGACGCTCAGTCGCGTCCAGAACATGGCTTTGCTGTGGACGTGCGGCTGCATGAGGTACGACAGCAGCGCCTGGACGAAGATGTAGAGCGCGCCGACGCCGAACGTCAGAATGGCGCCCACCAGGTGCATCGAGAACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU432559 True 217 lncRNA 0.46 1 240855 241071

Neighbor

gene id symbol gene type direction distance location
CI01000186_00215443_00223579 STK38, STK38A, STK38B coding downstream 13559 215399 ~ 223764 (-)
CI01000186_00175457_00185420 NA coding downstream 51718 175199 ~ 185420 (-)
CI01000186_00165206_00167364 PPARDB, PPARD, PPARB, PPARDA coding downstream 69679 165042 ~ 167459 (-)
CI01000186_00156270_00161766 NA coding downstream 75372 156183 ~ 161766 (-)
CI01000186_00144110_00151887 CAMK1GA coding downstream 85251 143662 ~ 151887 (-)
CI01000186_00259516_00260745 NA coding upstream 18345 259416 ~ 261189 (-)
CI01000186_00261713_00270433 CRY1BB coding upstream 20352 261423 ~ 270510 (-)
CI01000186_00281889_00289711 NA coding upstream 39841 280912 ~ 290480 (-)
CI01000186_00304422_00316712 ZNF76 coding upstream 63247 304318 ~ 316863 (-)
CI01000186_00318098_00318475 NA coding upstream 76657 317728 ~ 318475 (-)
G378476 NA non-coding downstream 21095 215782 ~ 216043 (-)
G378456 NA non-coding downstream 116970 119741 ~ 120168 (-)
G378457 NA non-coding downstream 118819 117796 ~ 118319 (-)
G378455 NA non-coding downstream 120268 114368 ~ 116870 (-)
G378454 NA non-coding downstream 124251 112664 ~ 112887 (-)
G378480 NA non-coding upstream 59815 300886 ~ 301234 (-)
G378481 NA non-coding upstream 61140 302211 ~ 302489 (-)
G378482 NA non-coding upstream 81458 322529 ~ 322781 (-)
G378517 NA non-coding upstream 203317 444388 ~ 444877 (-)
G378520 NA non-coding upstream 207038 448109 ~ 448422 (-)
G378466 NA other downstream 43378 192170 ~ 193760 (-)
G378458 NA other downstream 115713 120682 ~ 121425 (-)
CI01000186_00240507_00248051 DENND2DB other upstream 4302 240329 ~ 248084 (-)
CI01000186_00360860_00361637 NA other upstream 119839 360640 ~ 366991 (-)
G378509 NA other upstream 155187 396258 ~ 396755 (-)
CI01000186_00485805_00522951 CELSR2 other upstream 244725 485796 ~ 523767 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019925 dennd2db coding NC_007133.7 CM002906.2 835728 ~ 856886 (+)