G378204


Basic Information

Item Value
gene id G378204
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 245430 ~ 248174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432284
GTACTCGGTCAGAGGTGCCCAGTTGATTCCCTCTGGAAAGCAGAAGAGATGAGCGGCCTTCATGCACTTCTCCTCTTCCTCTCGCTGCAGCCGCCCCATCACCTCACGCTTGGGGAACTGGTACGTGATGTGTGGCTCGTAAGTGTCCTCGTTTCTCCTCTTCCTCAGACTAACCACCAGCAGGTACTCGAAGAACAGCTGGCCCATGTGACTGCGCTCTCGTCCGGGCGGAGGCGTCGCGGCCAGCGTCTGCAGCGCTCCAGGGTCAGAGGCGCTCCGCTCTGCAGTGGCACAACACACATCACATGACATTTAACAACAGACCTGAGAAACCACAGTTGGAACAATGAGGAGGTGCGACGCTCACAGACGCTCATTGTGCTCCAAACCTCAGAGGAAATGCTGGACAGCATCAGATCATCCAAACAACAAACACCAGAGACTCCAGCTCAATCTCACCAAATAA
>TU432285
GTACTCGGTCAGAGGTGCCCAGTTGATTCCCTCTGGAAAGCAGAAGAGATGAGCGGCCTTCATGCACTTCTCCTCTTCCTCTCGCTGCAGCCGCCCCATCACCTCACGCTACACACACAAACACACGATTTGAACTAACCACCAGCAGGTACTCGAAGAACAGCTGGCCCATGTGACTGCGCTCTCGTCCGGGCGGAGGCGTCGCGGCCAGCGTCTGCAGCGCTCCAGGGTCAGAGGCGCTCCGCTTGGTTCTGTGGAGTTTCTCCTGAAGCGTCGAGAACATGGAGCTGATCTTCTTCATGGCTCCATGATCCACGTCTGATCCACACGCCAGGATATCAGTGTCGGACGGAGTGTGTAGTTGTTGTCTGGTCCTCCACTTCTCTCTGCTCATCACTGTCTCTTCCAACACGCGCACTGTTTCTGACTGAAGCACGCAGACCGCCTGTCAGAGATTCTCAGCGGCGAGCAAACACGTGTTCGGCTGAGGGGCGGGGTCGCCGCGCTTAGCCACGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU432284 False 466 lncRNA 0.55 2 245430 245978
TU432285 True 517 lncRNA 0.58 4 245430 248174

Neighbor

gene id symbol gene type direction distance location
CI01000186_00235234_00237816 DRAM2, DRAM2B coding upstream 7309 234897 ~ 238121 (+)
CI01000186_00225560_00231307 CEPT1, CEPT1B coding upstream 13860 225560 ~ 231570 (+)
CI01000186_00209162_00212762 KCTD20 coding upstream 32293 209162 ~ 213137 (+)
CI01000186_00192359_00208026 CACNA1S, CACNA1SA, CACNA1SB coding upstream 37119 192359 ~ 208311 (+)
CI01000186_00190672_00191178 NA coding upstream 54072 190154 ~ 191358 (+)
CI01000186_00252556_00256882 NA coding downstream 4382 252556 ~ 257269 (+)
CI01000186_00272056_00278805 RBBP5 coding downstream 23494 271668 ~ 279177 (+)
CI01000186_00295882_00296578 BTG2 coding downstream 47495 295669 ~ 296951 (+)
CI01000186_00402892_00406010 APOBEC2A coding downstream 154718 402892 ~ 406133 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 coding downstream 164427 412601 ~ 416323 (+)
G378117 NA non-coding upstream 79983 162974 ~ 165447 (+)
G378187 NA non-coding upstream 86854 158339 ~ 158576 (+)
G378184 NA non-coding upstream 92157 153065 ~ 153273 (+)
G378148 NA non-coding upstream 191667 53350 ~ 53763 (+)
G378147 NA non-coding upstream 192332 52874 ~ 53098 (+)
G378213 NA non-coding downstream 69156 317330 ~ 317532 (+)
G378208 NA non-coding downstream 69988 318162 ~ 320122 (+)
G378300 NA non-coding downstream 240628 488802 ~ 492677 (+)
G378322 NA non-coding downstream 317822 565996 ~ 566341 (+)
CI01000186_00567272_00571417 NA non-coding downstream 318788 566929 ~ 571768 (+)
G378108 NA other upstream 231935 11415 ~ 15229 (+)
G378343 NA other downstream 646334 881526 ~ 896717 (+)

Expression


Co-expression Network