G378300


Basic Information

Item Value
gene id G378300
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 488802 ~ 492677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432420
AGCTGGCGATGGCGTCCTGCTCGCGCTCGTCCGGGTGCCTTCTCTTCCGGCTGGCTGTGTGGTTTCTGCCGGACTCTGGGATTGGCTCGCTGTGGTGCCGGTGACCTTTGCCCTCGGGGGCAGGGATGAAGACGGAGTCGGGAAGAGTGACGGCCGTCTCAAGGTCGATTGGGCGTGGCCCGCGCAGAGACTGATACCGCGGCAGTTTGGCTCCAGCAAAATTCATCTTCTCCAAACGATCGATGGAGATGACGATGTTGGGCGTGACGATGGTGAAGGGGCTCAGGTAGGTCTTCCTCATGTTCTGGGCGAGCGTGTTGGTGTACTCCTCGAACTGTCGCAGCAGTGTGGCCGTGCCGCCCTCCGTCTGCTGGATGAGCTCCCAGTGGCCGCGCGTGTCCGCTGATAGGATGGCACTGCCCACCTGCATCAGGTGCTCGTTGAACAGCACGTCCTGCGTAGCGCTGAGGTTGAAGCCCTGCTGGTTGCTCTCGTGCTGCAGGATGGAGCGCGTCAGGTGATACGCCACCTTCACGTCGCTGCCGTAGAACTCTCTGGCGTTCTTCGTGGCGTTACACAGCAGCACCGCCGTCTGCTGAACGTTAGCGGAGTCCATCAGAGACGCGTTACGCGCCAAGCGCTCCGACAGCGTCTTGAGTTTACTGAAGCTCACGGACGTGCAGTTGAAGAGGTTCGGCGACAGCCAGCCCTTGTGCTCATCGCAGTGGCGGATCGCAGTTCCGATGGATCCTTTCGGACACGAGACGGCGGCCGGTAAACCAAACTTGGTCCTCGGCCACCAGATTCCCGCTTCGATGGCCTGAGGACAGCTGTCGTAGATCACTTCACAGCCGCTGGACGAGACCTCGGCGAACGGGTTATCGCAGCGGTCACACTGGCGACCTATGACCCCCGGCTTACACTGACACTGACCGCTGTCCCGGTCACACGCGCGGGAGAACGAGCCCACGGCGTAACAGTCGCACAGCAGACACGAGTCGCTGGACGCAGGCTGGAAGTGATTGTCCTTGCAGCGACACGCTCCGCTGGTCTTGTTACAGTCGGCGTCGAATCCTTTAGCCGTGTCACAGTTACACGGACCACATGACTTATCGCCCCACCATCCGCGGGGACACGGGTTCGATCCGCAGGGGTTCGGCAGACTGCAGCCCGACTCAACGTTCACGACATGCGCCTGAGGCATGCTGGGAAACACAGCAGCGGAGGTGGATTCGCCCAGACGCAAGCCCTGAACGCATCCTCTGAACCCACTGATGACTTTATTCCTGCCGTCTGTGACGCCACCGACACTCAGAGTCTTCAGTTTAACGCCTTTTAACTTGGAGTCAAGATCCATAGACGCCGTGTACAGGCCGTGGTCGAGGCTCAGCGCCGCCGTTATGGCGCCCAACGCGGGGCCGCGGAGCTCCAGCAACACGTGGTGCCACTGGCCGTCGCTCACCGTGACATCATCAACACGAGACACAGCGGAGTCCTCGCCGCGCTGGACGGACGTCACCACACACCCCTCCCTCAGCTGACAGACACACACATGACCGTTAGTAATGGCTGATGACATCATCCTGCACTACATCATCCTGTTTGTCCAATCAAATGCTCTCTAGAACGAGAATGCCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU432420 True 1640 lncRNA 0.60 10 488802 492677

Neighbor

gene id symbol gene type direction distance location
CI01000186_00466293_00479755 DSTYK coding upstream 8811 466293 ~ 479991 (+)
CI01000186_00447837_00449357 NA coding upstream 39445 447837 ~ 449357 (+)
CI01000186_00444836_00447109 BYSL coding upstream 41568 444784 ~ 447234 (+)
CI01000186_00427652_00430661 TMCC2 coding upstream 57486 427652 ~ 431316 (+)
CI01000186_00422121_00422913 NA coding upstream 64692 422082 ~ 424110 (+)
CI01000186_00542490_00549351 NBL1 coding downstream 49813 542490 ~ 549605 (+)
CI01000186_00567272_00571417 NA coding downstream 74252 566929 ~ 571768 (+)
CI01000186_00572513_00575244 CCNL2 coding downstream 79836 572513 ~ 575315 (+)
CI01000186_00576917_00577699 NA coding downstream 84240 576917 ~ 577818 (+)
CI01000186_00578242_00581296 CCNL2 coding downstream 85439 578116 ~ 581373 (+)
G378208 NA non-coding upstream 168680 318162 ~ 320122 (+)
G378213 NA non-coding upstream 171270 317330 ~ 317532 (+)
G378204 NA non-coding upstream 240628 245430 ~ 248174 (+)
G378117 NA non-coding upstream 323355 162974 ~ 165447 (+)
G378187 NA non-coding upstream 330226 158339 ~ 158576 (+)
G378322 NA non-coding downstream 73319 565996 ~ 566341 (+)
G378325 NA non-coding downstream 144341 637018 ~ 637549 (+)
G378327 NA non-coding downstream 157135 649812 ~ 650154 (+)
G378350 NA non-coding downstream 259452 752129 ~ 752425 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 72479 412601 ~ 416323 (+)
G378108 NA other upstream 475307 11415 ~ 15229 (+)
G378343 NA other downstream 401831 881526 ~ 896717 (+)

Expression


Co-expression Network