G378539



Basic Information


Item Value
gene id G378539
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 535706 ~ 535908 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU432717
CACATTCATATTGCCATCAGTCATGGACATTTGCAACTCCAGACAAGTCTCGGTCCAGCCAGTGAGCTTCTTGCTGTTGTTTATGTAATTTATAATAAATGTAAGTGATTAGGCTTGTAATTAGACCGTGTTTAGTGGACTGTTAGCAGTTGTGACCGCGCTTTCCGCGAGCCCGCGGTCCCACTGATCATCCGCCATCTTGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU432717 True 203 lncRNA 0.46 1 535706 535908

Neighbor


gene id symbol gene type direction distance location
CI01000186_00525649_00532282 CAPZB, CAPZB.L coding downstream 3353 525556 ~ 532353 (-)
CI01000186_00485805_00522951 CELSR2 coding downstream 11939 485796 ~ 523767 (-)
CI01000186_00453106_00464818 NUAK2 coding downstream 70888 452092 ~ 464818 (-)
CI01000186_00433415_00435816 USP49 coding downstream 99712 432833 ~ 435994 (-)
CI01000186_00408656_00408943 NA coding downstream 126763 408135 ~ 408943 (-)
CI01000186_00588218_00590230 ORA4 coding upstream 52310 588218 ~ 590804 (-)
CI01000186_00640328_00644798 MFAP2 coding upstream 103264 639172 ~ 648186 (-)
CI01000186_00656484_00658437 SDHB coding upstream 120385 656293 ~ 658614 (-)
CI01000186_00723511_00725818 NA coding upstream 187418 723145 ~ 725921 (-)
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding upstream 213635 749543 ~ 761177 (-)
G378522 NA non-coding downstream 84288 451036 ~ 451418 (-)
G378520 NA non-coding downstream 87284 448109 ~ 448422 (-)
G378517 NA non-coding downstream 90829 444388 ~ 444877 (-)
G378482 NA non-coding downstream 212925 322529 ~ 322781 (-)
G378481 NA non-coding downstream 233217 302211 ~ 302489 (-)
G378540 NA non-coding upstream 285 536193 ~ 536507 (-)
G378541 NA non-coding upstream 721 536629 ~ 536950 (-)
G378591 NA non-coding upstream 47245 583153 ~ 583369 (-)
G378590 NA non-coding upstream 48943 584851 ~ 585279 (-)
G378592 NA non-coding upstream 49937 585845 ~ 586096 (-)
G378509 NA other downstream 138951 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 168715 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 287622 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 311942 215399 ~ 223764 (-)

Expression



Co-expression Network