G378564


Basic Information

Item Value
gene id G378564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 637649 ~ 639093 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432744
TTAAACATTTCAAGTCATTTTAATGTGTATAAAAACCATTCTAGCAACACAAAAAGACATTTCACACATAAAACAAGACTGAGAAGAGTATAAACTAGCAGTTAAAAAAATGCCATTTTTCTTATCATTGCAATCGACAATACCATTTACGCGATTCAGGTAGATCTGAAGGACGATCGCTTCTTTTCTCCTTACTTAACATGCACCTTAATGTTATTGCCTTTAAAATGTATTATAACAATTAATGAAGTTATAGCGTAGTGTCTCACCTCTAATTCGCGCCATTCCTGTCAGAGTCCGTTAAAACTCTGTGCGCGCGCTGCCGATGTCAAGCACGCGACCTAAATCTAACGGACTTTTGACACGTATAATTTACATTTTCAGAGAATCGCGGAATTCGTGGCTTGACAAATTAATCTCAGTGTGATACTGGACACTCTTAAAATCAACACGACAACTTTCCAGATCAACATTAATCACGTAAGTGAAATGTATCGGATTCAGAGGGGATTTCATTGAAGGGTGAGTTGATTACATCTCTGATCAATAAATCTGACCTGTCAACAATCAGTCGAGGTAAACATATAGCAATATAAAACTGAATTACAAATGATAAACATGCTTTCAGGTATTAAAAAAATACCTATCAGGGATAACTTCACTGAGTCACATTCACATAAACTATAAATATTACAGTAAAATATTCAAGTATTTGTGTCGAGTGTGTGTCAGTGTTCAGGGAATGTTTCATTCACTCATTAAACAGTATTACATTCACCTCATAAAAATATGTCCAGAAAACTTTTCTTTTGCATTAGGTAGAGAATTTAGAGAATAAAATGTGCTTAATTGTCATTATAATAGTGTCGCAATGTAACAAATCTTGGTCCAAAAAATAAGCTTTGTTTTCTTTAAGCAAAATACCATTTTTATAATTTTGGTTTTGGGGTAAATATTAATATTCATTAAATATTAGATTCACACTTTCAGTATTCTGTTAAAAAAACTCAGTATGGCTAAAGGCCCGCTCACACCAAGAACAATAACTATAAACATAATTAATGTTGCCATCAGCTGGAAAAATCATTCTGTGATTCCAACGATATAGTTCCTCTGTACCGTTATCATTATAGTTGTGTGAACTGCTATTCTTTTACATTTAGAATTATTTTTAGAACTATATCTATATTTATAGTTTATGTCCTTGGTGTGAACAGGCTTTAAAAAGGTCATATATCATTAAAGGATTAGTTCACTTCAGAATTAAAATTTCCTGATAATTTACTCACCCCCATGTGCATCACAGAGCAGTGCAAGACGAGCATTTGTGGTTAAAAAGAATATAATCTTTTTTTTTTTTAGAAAATGTCCGATGGTTTCTCTAGATAAGACTCTTATTCCTCGTCTGGGATCATGTAGAGCTCTTTGAAGCTGCACTGAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU432744 True 1445 lncRNA 0.33 1 637649 639093

Neighbor

gene id symbol gene type direction distance location
CI01000186_00588218_00590230 ORA4 coding downstream 46845 588218 ~ 590804 (-)
CI01000186_00525649_00532282 CAPZB, CAPZB.L coding downstream 105296 525556 ~ 532353 (-)
CI01000186_00485805_00522951 CELSR2 coding downstream 113882 485796 ~ 523767 (-)
CI01000186_00453106_00464818 NUAK2 coding downstream 172831 452092 ~ 464818 (-)
CI01000186_00433415_00435816 USP49 coding downstream 201655 432833 ~ 435994 (-)
CI01000186_00640328_00644798 MFAP2 coding upstream 79 639172 ~ 648186 (-)
CI01000186_00656484_00658437 SDHB coding upstream 17200 656293 ~ 658614 (-)
CI01000186_00723511_00725818 NA coding upstream 84233 723145 ~ 725921 (-)
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding upstream 110450 749543 ~ 761177 (-)
CI01000186_00763236_00766749 SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S coding upstream 123989 763082 ~ 766749 (-)
G378592 NA non-coding downstream 51553 585845 ~ 586096 (-)
G378590 NA non-coding downstream 52370 584851 ~ 585279 (-)
G378591 NA non-coding downstream 54280 583153 ~ 583369 (-)
G378541 NA non-coding downstream 100699 536629 ~ 536950 (-)
G378540 NA non-coding downstream 101142 536193 ~ 536507 (-)
G378560 NA non-coding upstream 14710 653803 ~ 654892 (-)
G378552 NA non-coding upstream 27953 667046 ~ 671996 (-)
G378600 NA non-coding upstream 33316 672409 ~ 672749 (-)
G378604 NA non-coding upstream 63195 702288 ~ 703665 (-)
G378509 NA other downstream 240894 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 270658 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 389565 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 413885 215399 ~ 223764 (-)

Expression


Co-expression Network