G378552


Basic Information

Item Value
gene id G378552
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 667046 ~ 671996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432732
ATATTGTTAGTCAAGTTTATGCATTTGCAGATACATTTCACCAAAACGTCTTACATTACATTCAAGGTAAACATTTCTGAATCAGTTCGTGTTGATTGAGTCAACAAGCAGACAAAAAACATGGTTCAACTCAAACTCGAACAGACGTAAGAAATGAAAGTTGCTTTACTGTCAGACATAAAAACAGTTTCCATCTGATTTCATGAAGTTGTTTCCAGTCTCTGTGATCACTGACAGTGAAGTAAACATCAGCCACCGACACAAACACAGACGCGAGTTACAGCGGTTTTAATCATTCCTTCTACTAACACATGATCGTGACTCTAAACGAGCGTTAAACTGGAGTCCCGTCAGGTTTGCTCTGTTCTGACGTCTTCCTGCTGTCCTCCGGGACTTCCTGCAGAGGGCTGAGCACTTCCTGTGCCTTCAGCGGCGGCGTGAAGCCCGTCTTCGTGCCTTTAGCGGGTGTTTCTGGTGCCGGTCGGCCCTCGTTGTCCAGAACTCCTTCTCCATGAAGCCAGTCCATCTTCTGCCGGTGCTGCCGGATGGCCTCGTCCACACGGGCGTCGATCATGGCCTCAGTCAGGACCCCGTCCTCGGATGCGTACGCCGCCGCCTGACACACACACACACACACACACACACACTATCCATGAGCCTCTGCAGGACATCAGTTTTAATTCTACTTAGCCAATGAATTAATGTTTGTCATTTCTGAGGTTTAGCATGTTTAGTGTTGCTGAACGAGGAACAGACCTGCCATGCGACTCCGAGTTTAGAGATTTCTCGTCCAGACATGCCGTCCACACGCTTCGCAATCTCCGAACACTTCAGCCCATAATCGAACGGAGCCAGCTTCAGCCGCCTGCACACAATCAATCAATCAATCAATATCCAAATGACCTCATTTCATCGAGCATTTATAATCCAATTGTGTAAAAATGTCTGAATCAGTGTTAGTGTTAACTAAAACTAGAGCTGTAAAAATGTACTTTAATTGAAATAAAGCTGAAATACAACATTAATTAAAGTGTGTAGTGTGTGTATGAGAGAGTGTGTGTTCAGTGTGAGTGTGTTCAGTGTCTGTGTGTGTGAGTGTTCAGTGTGTGTTCAGTGTGAGTGTGTGTTCAGTGTGTTCAGTGTGTGTGTTCAGTGTGAGTTCAGTTTGAGTGTGTTCAGTGTGGGTGAGTTCAGTGTGTNNNNNNNNNNNNNGTTCAGTGTGAGTGTGTTCAGTGTGTGTGTGTTCAGTGTGTGTCTCACTGGCGTCCTCCAGTGGCCGGCTCCAGCACGTATCGGTCGAAGTACAGCCGCACGAGTCTCTCTCTCTCTTCGGGTCCCGGCAGCATGAAGTTCACGATCTCGTCGATTCGGTCGTTTATGGCCCAGTCAAACTGCTCAGGCTGATTACTGGCCAACACCAGCATAAACCTGCAACACACACACACACACACACACGATCAACACACCAGCGAGAGACAGACAGGTGTGTGTCAGACAGACAGACGGGTGCATTTACTTGTTGCTCTGTTCTCCGGTGCGGTACAGGAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU432732 True 1550 lncRNA 0.47 2 667046 671996

Neighbor

gene id symbol gene type direction distance location
CI01000186_00656484_00658437 SDHB coding downstream 8432 656293 ~ 658614 (-)
CI01000186_00640328_00644798 MFAP2 coding downstream 18860 639172 ~ 648186 (-)
CI01000186_00588218_00590230 ORA4 coding downstream 76242 588218 ~ 590804 (-)
CI01000186_00525649_00532282 CAPZB, CAPZB.L coding downstream 134693 525556 ~ 532353 (-)
CI01000186_00485805_00522951 CELSR2 coding downstream 143279 485796 ~ 523767 (-)
CI01000186_00723511_00725818 NA coding upstream 51330 723145 ~ 725921 (-)
CI01000186_00749734_00761177 PRKAR2A, SLC25A20, PRKAR2AB coding upstream 77547 749543 ~ 761177 (-)
CI01000186_00763236_00766749 SLC25A20.2, SLC25A20, SLC25A20.L, SLC25A20.2.S coding upstream 91086 763082 ~ 766749 (-)
CI01000186_00768176_00773034 NA coding upstream 95685 767681 ~ 773102 (-)
CI01000186_00777653_00779924 GDI1 coding upstream 104724 776720 ~ 782157 (-)
G378560 NA non-coding downstream 12154 653803 ~ 654892 (-)
G378564 NA non-coding downstream 27953 637649 ~ 639093 (-)
G378592 NA non-coding downstream 80950 585845 ~ 586096 (-)
G378590 NA non-coding downstream 81767 584851 ~ 585279 (-)
G378591 NA non-coding downstream 83677 583153 ~ 583369 (-)
G378600 NA non-coding upstream 413 672409 ~ 672749 (-)
G378604 NA non-coding upstream 30292 702288 ~ 703665 (-)
G378616 NA non-coding upstream 55700 727696 ~ 727916 (-)
G378622 NA non-coding upstream 66344 738340 ~ 738623 (-)
G378509 NA other downstream 270291 396258 ~ 396755 (-)
CI01000186_00360860_00361637 NA other downstream 300055 360640 ~ 366991 (-)
CI01000186_00240507_00248051 DENND2DB other downstream 418962 240329 ~ 248084 (-)
CI01000186_00215443_00223579 STK38, STK38A, STK38B other downstream 443282 215399 ~ 223764 (-)

Expression


Co-expression Network