G378343


Basic Information

Item Value
gene id G378343
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 881526 ~ 896717 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU432492
TGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAATAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGGGAAAAAAAATGAACTTAAATGATTTCAGCAAATGGCTGCAATATTACAAAGAGTGAAAAATTGAAGGGGGTCTGAATACTTTCCTGTACCCACTGTAATTAATTTTACTAATTACATAAAATTGTATATAATATAAATATACATGTATCAAATATTGAAGGTTTCAAAATTCTCCAATAATATTCTCACATTATGAAGTATCCAATGAGATCGCGCCTGACGTCACTAAATCTCCGCCGTCGCGCGATTATTATATCCTGCACGTTCGAGATCTTTCTCTTTTCTCTCTAACCTCTGATACAAACGGACGCTTCTCGCTATCCCGGGAGATTCAGTGCCTCGAAGTCGGAGAAAAGTAATGTTCAGAGAGAAGCAGATTGTGCGGAGAGTGACACTTTGGAACGCATATGCTCTGGAAATTTCCTGTTTGGCCGATGTACGTGTGATGAATGAGTTCCTTGGCCAGGTTTTTTTTTTCCTGTGATGTCTGTTTGAGTTTCGTGGAGCCAGCTACTGAATGTTGCCAGATCTGGATGTGGATTAATCAAAGCGTTAATCCCTGTGAATCGTCTCAACTCCTTCCTGCACTTTCTATGTGCATCTTGGTGGAGTTGGACTGGCGGCCCACCTGTAGAGTGAATCCTTAACTTCTTGTGAACTTAACCGTGTGGTCGTCGAACGGTAGGACAGGAATTGCACAACAAACTTGTTTTTTTTTTTTGTATTCGTCCTAATCCTGGATCAACTGCACAGACTGTGAATTACACCACGTTCAAGGAACTTTTTCTTCCAGGAACTGAACTGAATTCATGGACTGATTTTGATTTTTATATTTTATTTTTTTCATTTTGAGGTCTTCCAGTTTATGGTGAATGAACCCTGTGGTTACTGGTTATTCAGTCCAATAACTGAAATTTTATTTGTTCATGTTAAACTGATTGGATGTTAATGTGTAAAGAGTGAAAACTAAATAGGGTTAAATTCAAGAACAAGTAATTCAGACAGAAAGGGCAGTGAAAGTTTATTTTATTTAGTCTTAATTTATACACAAACAAATTACATTTGCCCTAATTGAATTCTGAACTGAAAATTAATTGTAATAAGTGAAAACAACTATCAAATTCCTGGAAAGAAGGAGGAAAGGGTACAAATTAGTGTAACGTGAATATTCCTATGTCACTGCATTTAAATTAAATCAATTATTTCTTGTGTTCAATACAGTCAAAACTTGCTCTTACCAAAAACCTTGACCGTCTGAATTTGTTCACTCTTGTTGCACCATCTCTCTCTGTGGACAAACCTAGACTTCTGAGCACATTGGTCCAGCTGTAGAGTCAACATAAAATTTACACCTCAGGTGTGGGTTGCACTAGCACAACTGCATAACTTATCTACGCAAAGATAAGGGCCTACCACCTGAGATAACGGCATCAGGAAGTCTAAAACAGTCTACAACCTAGCTGTTAAACTCAACAGTTGCACCTACATAGCAAGGGGATAATGGGCATACGGCCTAACAACTCCCTCAGGAGGAGGCCAGAACTAGGAACTATATATCCAGACAGGGATAGTATGTATAAGGGGTTATTAAACGAATAACACAATAAACCTAGCTCTAGCCTGGCCGCTAAGCTATGGGCCTAGATACAACAACAGGCACCAAAGAGCTTAATAAAGCCTGTTATTCGCTTCCAAATCTCATGGAAAGAGAAAGAAAGCGAAGTTCACAAGCAGTAAAGTCAGGCGGCCGAAAAAGGCCACCGACACATATAAACTGAAGTAGTGAGTGCCAACTCAGACTATACTGAAAAAAAGCTGAGAAGCTCAAAGGAGACTAAACGGCAGACATTTTGTGGCCTGCTTAGTCACCTTGAAACCACTTCAGTTTTGCCCAAAAACCCCTTAACATATTTTACTGTTACAAGCTCAGTAAAATAAATATATATATATATATATATATATACAGGAGCAAAAACAATGTCAAACATTTAAATAATAAATCGGACCTTGTCTTACCTTCCCGCGGCTCGAAGACCAAGGACTCTTCCTTCTGAATTTGATGGAAGGATAGAATCCAGGTTCTAAGCCAAAGAACCCTTTCACTATCAAGCCAGAAGGCGGGCCGTCAGAGAAAAATTCATCATGGGCCCAGCCGTCAGCCTAACTGTTCAAAGGTGTCTCCTGAACATGCACAGTTGATTAAAAACTCCCGGGAGGCCGAGGAAGAGGGGCGGGGGTAAAAGTAATATACACCTGCCAGAGAGGAGATCGACTACCGGCGCTGCTGGCGCCTGTGCTCGATCACCTCCCTCAAGTCTTGCTTCCTCTTCCTCGTATCCCGCCGCTTTTGCGACTTACTCCGAGGTGGGGGAGGCACTCGAGCGGCGACACTGGATCACTGGCCCTGTCTCTGAGACTCGACTCGAGACGGGCCAGGGCCTCCCGGCTGTCTCGGCCCAGAATCGGATCTGAGCGGTATACAGTTCTTATAAGCTGCTGAGCGCGCCCTTGCCTATCCGAACCCTCCAACGACCGTCTCAACGGAGCCGCCAAAAAGTTCGGAAGGTGAGACCGGGGCATCATGTCTGCCATGTTCAGCCACAGATGCCTCTCCATGGCCACCATGGCCACCATCGATCGACCAATCGAGGCGGCCGTCTGCTTGGTGGCCCGGAGAGTGAGATCTGTAGTGCGGCGCAGCTCAGCTACCGCATCAGGGGACAAACCCTGCCCCTGATCCAGATCCTTCAGCAGGTTCGCCTGGTAGGCTTGCAACACTGCCATGGAGTGCAAAGCCGCGCCAGCCTGACCTGCAGCAGCGTATGCCCTGCCGTTCAGACGAGATGTCATCTTTAGGGGTCTAGACGGCAGGACCGGAGCTTTTAGTGTCGGTGCACTGCCAGTGACGAGATAGCTCGCTAATGTTTCATCAATAGGCGGCATCGACACATACCCGTGCTGGCATAATCCCTCCACATCAGCGAAATTTCCCCGCTGATGTGGATGTATTCTCGCTGAGTATGGGCTCTTCCATGCCTTCTCAATCTCTACGTGGAGATCAGGAAGGAATGGAAGGCTCACAGGAGTTACGTGGTTATGGTCAGAAAGAAATCGTTTGTCAAGTCTCCCGCGTACGACCTCTTTCCTCTTTCCGCGCTCCATAACCTCCAGTAACTCTGCATACGCTGGGCAAGGAGGCCTGGAGAAAGAAGCGGTCTCTGCCTCAGCACGAGCGGGGCCAGACCCACCAGGCACAGATGTCAACGCCCCTTCCCTTGAGAAGAGGGCCAGGTGGGAACGAGCGTTTTCATAGGGAAACGCTCACAATTTGCACAGACAGCGCCCTCAAGCACTGTCCGTGCATGTTCTTCCCCAAGACAGTGAACGCAAAGGTTGTGTGTATCTTCCGGCATCAAGAATCTTGGATCATGGACATGGATCAGCACACTTCCTAAAACGTTTTCCTGTGTCTTCAGACATGATAAATACCTTCTTGTTGTAGAGGTAGCACGATAGTGGCAGACACAAATAGTCCTGAAAGACGAAGAGATACTGACTGCTTCGCTAGGCGCTCCTTTATACTTCCGGGTCGCGCCTTATGACGTCATAGGCTGTCGCCGGCCAATAAGGATTGGAGTTATTGGATAGTTGGCTTTCGAACACCGAGTCACGTGTGACGTTTCCCATTGCGTATTCATCAGAGAGCGAGTTCCCTTTCGAAAGGGAACTTCATCCTTCACATGCACAGAAATGTGCTTGGCGTAATAACACCACAGTGGGGCGGTGCTCATGCTGAATGCCACAGATTGTACTACAGACTGTTTAAATTGAGCAGTGTAACTTTTTATATGTTTGGTTGACTGTATTTTATTCTGATAATAAACAGGCTGTCATTTCAAGTTTTCTAGAGCTGATATGTTGTGCGCTCGCGTGAGGTGATCTGCACAATCACTTGAATTGTTTCCTTTACAGCTTTTGTAAAATAAAGAAAACAAACAGGATGCAGTTTCTGTCATCTGTTTCCTTTCCATTAAGTGTTTGTGGAGTACGTCAAAATGAACCAAAACTCAGCATATACTACTTGTCGCTCTTTTTTTTCCCCCATTTTGTTAGTCTGTTAATTATTTAAGTGAAATATATTTCACGTATTTATTACTTTTATTTATATATATATATATATATATATATATATATATACACACTTTTATTCTGTTTTTCTCTATTTACAGAAGTACTGCATGTGTGTGATGTGAATCCTGATGTTCTGTTGTTTATGCTGCTTTTTGTGCGTGTAAAACTAAGCCCCTGGAAAACAGATTTTATCATTTTTAATGGGTCACAGACACTTATCCATTCTAATTTAATTTAATTCTAATTTAACATAATCTTGTTCGTTTAACAAGCTTTGGTTGTCAGTTAGGGAAAAAACAAAACAAAAAAAAAACTAGATGAACATCCCTATTAAAAACCGATGGATTTTGCCATATAATTTGACATTATATTTGCACACAGTAATTCTCATTCGTCAATGAAAGTGACAAGATTGGACTGTATAGCTCTGTTGTATTATGTTTGATGGATAAAATTATAATGACTTGGTTTTATAATTTAGCTGAATTTTAAAATGAGTTATTTGTGTAAAAGTATATAGACACTTGTACATTTGGTAGAAACTTTCTTAAGCAACTTATGAATTTTTTTTTTTATTAGTCCATGCATTCCCTGAGAATTGAACCAGTGATCTTGGCATTGGTGCCATACTCTACCAGTGTACAATAACACAAACAAAGAGTGCTTTTAGAAACTGCATTTAATGGACATGTAAGACACAGCACAAAGAAGTCATATTATATGCTTGCTTGTGGATGTGTTGTGATGTCTCATCTTCATTCTTCATCCTTGCTCTTCAGTAAAAAAAAAAAAAAGACATTTACAAAAATGAATTTGCATTTTTTTTTTTCAGTCAGAAACTTCTGTATATTAAGCAGTGTATATTAAGATTCACCCCCTACCCTTTTTGCAAAAATAAAGAAAAATGAAAAAAATAAAAAAAATACAATACCTTTCCAGCATCACGGCTCTTGACCCTCAGCTTGTTGACCTGAGACTCGGCGATGTCAGCGCGCTCCTGAGCCTCCTCCAGCTCATGCTGCACCTTCCTGTACCTGGACAGGTGAGTGTTGGCCTGCTCCTCCTGTTACGATTACACAAGATATCCAACCCATTTCATAGCAGTGCATTCATGGCACTGGACGCTTTTGTCAATACTAAAACTTCACGCTCAAGACATTTGATATTAGACTTACAGATTCTTCAGCCTGGCGCTTGTAGGCCTTCACTTTCAGCTGCAGCTTGTCTACCAGATCCTGCAGTCGGGTCACGTTCTTCTTGTCTTCCTCAGTCTTTCGGTGTAAATATGGTTCATGGTCTTAGTTAAAGTATATATATTACTATAAAAGGTGGTACATTTCTAATTCCTAGGCAGTTTTACCTGGTAGGTGAGCTCCTTCACCCTCCTCTCATATTTGCGCACTCCTTTCACAGCGTCTGCACCACGTCTCTGCTCAGCTTCAACTTCAGACTCTA
>TU432491
CATTTAGTGTCTGCTAAATGATTAAATGTAAATGTATTGAATACTGCAATTGCTCTAATACGATCATAATTCATAATGTGACATGCAATATGTAAAAACTGTTGCAGTGTCTGATTCTGTGGATGAGCACATTAGTTACTGCAGTTGAATTGTCCAAATCAGATTAAAATTTCATTCGGATTGTAAGGGGTGGTTTCAATTTAAGCCTTTTCTAATCCGATCGAGAGGACAAGTAAACAGTTGATTGGTTTTAAAATGAAACTAGAAAGTACTGTCCATGTGCAGTGACGTAGAAATGGTGTAATGACGTATGACACGTGGAACAAGCTGCTGTTGTTGTTGTTGAATGAAGTGTCATAAATGACTGTCGTGTCATTCTAAAATTCTCCTTCCACTCATCGTCTGTGAATGGAGCAGGACATTGTCCCACCAGTCCTTGTTTCGGGCTCTCAACCACAGACGCCTTTTTTTGGGTGCAGGAAGGGGCGTTTTTACTGCTTGATAAATATAAGCAGCACGGCACAACAGTTCATGTGCGTGTTGTCTCCTAATTAGGACTCAAAATAGATAAATATTAAGTGTACTCTTTAAAACAAAGAAAAGAAGCAATTTAGGAGAATAGTATGTGCAAACAGTGGGAAATTCTCTATATATGTGCAGTGTCACACATATCAGTGTCATTCATCTGTTTCTTTTGTAGTACCCTCTGTTCGTTTAGTCACTATGGGGTCCAGGGCATTCAGCTGCGCTGCTCCTCGTCTCTGGAATTTTCTTCCACAATCTAAACAAGAAAGTGATTGTCTGGCTACTTTTAAATCATGTCTTAAAACGTATCTATTTAAATTAGCATTGTTTTGTTGCAGCTGTTGTTTTATTGCATTGCTGTCTTGATTTGTTTTTATGACTATCACTCAACTGTATGGTGTCCTTGAGTGCTTTGAAAAGGCACCTTTAAATAAAATGTATTATTTTATTATTTGTATAGTAGGAAGTTTGCGATTTCAGATACAACCACAATGTTGCTGTAACCACTGCATGCGCAGAACTTCTCTTTGTGCGGAACATCATGTCAAACTAGGTGAGTTTCTCACCTAGGATCGGACAATATTGTTTATATCAACATACTTAGATGTTGCGAACACATCTGAAAAATAAGGAAGGACAAGAAAGTTTTGGATTATAAATATAATTTATTTGATACTGAAAGGTATGGATTTAAACATAATTTAATACTGATATTAATGATGAGATGTTTTAGCAAAAATCTCAGCTAATGGATGACTATAAAAATTAATTATATTGTATTTATAACTATACTATAAATATTATTTTGGATTTATTATTATTTATCTCCTATAGATGATAATGCAAATGATTTATGAATCAATCTGCAGAGATGAAACTGTCCTTTACTAGCTTATGTCTTTGAAAAAATGCATGTGATGAAGTTTGAAAGTGGAAAAAATAATGGACAATAAAGTCAAAATTTTCCATTTTAATGGACACAGAAAAACTCAATACAAGTAAGTCATATCATATGCTTGCTTGTAGGTGTGGTTTCTTGTCTTCATTCTTCATCTTTACTCTTGAAAATGTGAAATAATATAGTTAGATTCTGTGGAAAATGTTTCATAAATATGTATAAAAAATAACCTTTCAGAGTTCTACATGATCATCAGTTGTTACCTTTCCGACCTCACGGCTCTTGGCCCTCAGCTTGTTGACCTGGGACTCGGCGATGTCAGCGCGCTCCTGAGCCTCCTCCAGCTCATGCTGCACCTTCCTGTACCTGGACAGGTGAGTGTTGGCCTGCTCCTCAGATTCTTCAGCCTGGCGCTTGTAGGCCTTCACTTTCAGCTGCAGCTTGTCTACCAGATCCTGCAGTCGGGTCACGTTCTTCTTGTCTTCCTCAGTCTGGTAGGTGAGCTCCTTCACCCTCCTCTCATATTTGCGCACTCCTTTCACAGCGTCTGCACCACGTCTCTGCTCAGCTTCAACTTCAGACTCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU432492 False 5701 lncRNA 0.42 2 881526 896717
TU432491 True 2009 TUCP 0.37 3 894508 896717

Neighbor

gene id symbol gene type direction distance location
CI01000186_00796544_00798374 NA coding upstream 82717 796544 ~ 798809 (+)
CI01000186_00773514_00774851 NA coding upstream 106564 773322 ~ 774962 (+)
CI01000186_00697638_00721963 SPEN coding upstream 159563 697583 ~ 721963 (+)
CI01000186_00692336_00696891 NA coding upstream 184240 692258 ~ 697286 (+)
CI01000186_00676085_00686938 FBXO42 coding upstream 193876 675557 ~ 687650 (+)
CI01000186_00941016_00950379 NA coding downstream 42822 939539 ~ 950529 (+)
G378341 NA non-coding upstream 28222 827506 ~ 853304 (+)
G378290 NA non-coding upstream 82171 755360 ~ 799355 (+)
G378352 NA non-coding upstream 127305 753992 ~ 754221 (+)
G378351 NA non-coding upstream 127797 753509 ~ 753729 (+)
G378350 NA non-coding upstream 129101 752129 ~ 752425 (+)
CI01000186_00413028_00415878 SFRS3, SRSF3 other upstream 465203 412601 ~ 416323 (+)
G378108 NA other upstream 868031 11415 ~ 15229 (+)

Expression


Co-expression Network