CI01000192_00169090_00206672 (SCUBE3)


Basic Information

Item Value
gene id CI01000192_00169090_00206672
gene name SCUBE3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 168969 ~ 206672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000192_00169090_00206672.mRNA
ATATCGATGAGTGTGCCAGCGAATCTAATGGAGGATGCGTTCACGATTGTATCAACATCCCTGGAAACTACAGATGCACGTGCTACGATGGCTTCCGTTTGGCCCACGATGGACACAACTGCCTGGGACTTTATCCCACACAAACCATACAAACAGAAGTTTGTGGGTCTTGCCGTCATTGCTGGAACCAAACTTATAATGGTTGATGTTCTTCAGGCATGTCTAATCAAACTCTGCACTGACCGCCAGAACGCTGTCACTCTATCCTCCGTACTGCGTGAGCTCACGTTTTCAACATTCGGTGGCTCATATGCCCAGTCGTTTCCAGATGTTGACGAGTGCGCAGAAGGAAACGGCGGTTGCCAGCAGATCTGTGTCAACATGATGGGGAGTTACGAATGTCGATGCCGTGACGGATTTCTCCTGTCCGACAACCAGCACACCTGCATCCAGAGGCCCAAAGAGAAAGTCTCTCAGATGGACGCAGAGCAAGTGGAGAATAAACCTAGAGGAAATGAAGTCCCTTTAGTGCTTCAAGCTGTGCAGAAATGTCACAGGAAGTACTTTCTAATCAAACAAAACAACGTTCACTGGGTGAAGCTGCAGAATTGCGGTTCTGGGTGCCACGGGTCTGTTGACACAGATGCATCCTGGGGTCTGAAGTCAGTGGGGTGCTTTCATTCTCCTCTTACTGTTCAAACACTGATGAGCATGATTCTGATCTGGGTGCGTTTTAATGGAACTAAAGAAGCACCCACCTGCATGGATAAAAATCACGGCTGTGCCCACATTTGCAGAGAGACGCCTAAAGGAACCATCGCCTGTGAGTGCAGACCGGGATTTCAGCTCACCAAGAACAACCGAGACTGTAAACTGACGTGTAACTACGGTAACGGCGGCTGTCAGCACATCTGTGAGGAGATGGACCACGGGCCCAGATGTTCGTGTCACATGAAGTTTGCGCTTCACTCTGATGGGAAGACCTGTGTAGAGTTTGGCTTGATTTTATGCGGTGGAACCAAATCTCAGAGTTTCACTCAACATACAGTGAGAAATGGGCTCTTCTCTGCATCTCAAGTGTTTTACACTTTGCTTTGTATTACTGCAACCAATCACAGCAGACCTCTGATTCCTGAAGGACTAGCTATCCACAGCAGACTTACAGCTGTTTACGCCGAGCCTGATTAACGTCATTTAAAATCTCTGTGCCAGAACAAATAATTTTGTGTATTGTGTGTATTTGTGTATTTTTTTATTCAGAGAGTAGAACATTTTTTATGAAAAATTACCCCAAATCCCCCAAAATAAA

Function

symbol description
scube3 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000192_00169090_00206672.mRNA True 1309 mRNA 0.47 10 168969 206672

Neighbor

gene id symbol gene type direction distance location
CI01000192_00124135_00167418 SCUBE3 coding downstream 1140 123577 ~ 167829 (-)
CI01000192_00116033_00116872 NA coding downstream 52097 115839 ~ 116872 (-)
CI01000192_00252038_00254509 NA coding upstream 43880 250552 ~ 254509 (-)
CI01000192_00315657_00323729 STK35 coding upstream 108901 315573 ~ 325189 (-)
CI01000192_00345708_00354498 NA coding upstream 138591 345263 ~ 356428 (-)
G384247 NA non-coding downstream 97503 42296 ~ 71466 (-)
G384279 NA non-coding upstream 79580 286252 ~ 287782 (-)
G384286 NA non-coding upstream 105646 312318 ~ 314443 (-)
G384329 NA non-coding upstream 118803 325475 ~ 325699 (-)
G384331 NA non-coding upstream 119975 326647 ~ 326991 (-)

Expression


Co-expression Network