G384285


Basic Information

Item Value
gene id G384285
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 121263 ~ 221760 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU439487
TTAATTTGTGTTCTGAAGATGAACGAAGGTTTTACGGGTTTGGAACGACATGAGGGTGAGTAATTAAAGGGGACCAATGCCAATTTTACAAGATGTAATATAAGTCTCTGGTGTCCCCTGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGTTTGTCAAATTTGCTCCTATTTGGGTGTGAGCAAAAACACGCCGTTTTTGTGTATGTCCATTTAAATGCAAATGAGCTGCTGCTCCCCGCCCCCTTTCCAGAAGAGGGCAGAGCTTTAACAGCTCACGCTTCGGTTGCACAACAACAACAAAACTGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU439487 True 331 lncRNA 0.42 2 121263 221760

Neighbor

gene id symbol gene type direction distance location
CI01000192_00116033_00116872 NA coding downstream 4391 115839 ~ 116872 (-)
CI01000192_00252038_00254509 NA coding upstream 28792 250552 ~ 254509 (-)
CI01000192_00315657_00323729 STK35 coding upstream 93813 315573 ~ 325189 (-)
CI01000192_00345708_00354498 NA coding upstream 123503 345263 ~ 356428 (-)
G384247 NA non-coding downstream 49797 42296 ~ 71466 (-)
G384279 NA non-coding upstream 64492 286252 ~ 287782 (-)
G384286 NA non-coding upstream 90558 312318 ~ 314443 (-)
G384329 NA non-coding upstream 103715 325475 ~ 325699 (-)
G384331 NA non-coding upstream 104887 326647 ~ 326991 (-)

Expression


Co-expression Network