G384279


Basic Information

Item Value
gene id G384279
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 286252 ~ 287782 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU439477
CTGGTTTTAAGAAGCATTCAAGTTCATTTAGGTTTTCCCATTCCAGTTTTTACCAGCTTAACACAATATAACACATTATAAATGACATTTAGCCCACATATAAAAAGAAATACAGTGCATACAATACATGCTATATTTATGAACTTTGCTAATAATATATACATGTACTTGTGCATTGTAATAATTCTCAAATTGTTCATTAAAACTAATGCTGTCAGTCTATAAAAAGCATGACTGTCATGCAAAAGCTGCATCAAACGCTCCACAAATTCAAACCATGAAAATAATTTCCAGCAAAAGTCCCACGTTATGGTAAACTTGAGAAGACATTGAGATGAACAGATGATATAAAGCTCATAGAAGCTCGTTTCTGCCATGGAATAAAACAAATCTCGCAATTCGGACTTATTTTCTTACAGTTGCGAGTTTATATCTCACAATTCTGAGGGGGGAAAAAGCAGAATTGCAAGTTATAAACACTGAAACAAGCTTCCATAAAAAACTGGCTTGCATGAGATTATCTTAAAAACATTTCACTATATAAAAACTGCAATAAAACAAAAGGTTAAATTCAAAGAGAAACCATCTGAAGTTTTTACTTCACATTCACATTCATTTACTCTTTATGTCTTAGTTTTGTGTTTTCTCCCATGTTTTACAGTGGATAATAATGCTACTGCCGTCCTATTTGAAGCCTTTGGTGATTATGATTCAGGAGTTTCACTGGCAGGTATTTTTTCTCATTTTAAGCAACAAAAAAATGGATGCAATATCGTATGTCATTTTGCTTCTCAAGTAAATGTATCTTGATTTAACAATGTTTAGATATTTGTACTGGAAAACAAGACAAAAAAAACTGAGGAAGACAATAATTTCTTATGTGTTTTGTGCATGTCTCTTCAGGATATGATGGATCTCATCCACTCCAGACTCTCACAGAGCAAGCACCAGCCCGATGAGCATCAGTAGATGAGATAAGACGCTTTCCATATTGGATCCACGATTCTTCTTCGCATTTTCCATGCCTGTATCTTCAATTTTAGTGTGCACATGTGTGGGCTCTCCGAGAGTATCAGTGGGCTCCGTGGTCACGTGGGGACGCTCAGATAAGACAGTCGGATCTTCAGTGTTGTCCGGTTGCTCAGATGGATGCCACTTCTCAGCCACTGTGAGGAAAAGAGTAGGGTTTACAACAAAAACAGGCATAGTTTAGTTCTTCATGACTGTTTTCCACCACTTTTTATTTCATGTTGATTTGCATTGATAAAGTTTTCACTTTACCACAGATGTTCTTCTCACACATTGGTATGGTATCTGGACACTGTGAGCACGGCTCTCCAGAATTGTATGGCTTTAGTCCCTCAAAATTTCCTCTGAAATGAAGGAAAAGGGAAGGGTGGATTTTATAGATATTTCACTTTATTGTGTGAAAGGTGTTTTAGATCAGTGGTTTTCAACTAGATGGCTTAAATATAAGACAAAACAGCTAAAAGTCAAGTTTTAATTCCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU439477 True 1510 lncRNA 0.36 2 286252 287782

Neighbor

gene id symbol gene type direction distance location
CI01000192_00252038_00254509 NA coding downstream 31743 250552 ~ 254509 (-)
CI01000192_00169090_00206672 SCUBE3 coding downstream 79580 168969 ~ 206672 (-)
CI01000192_00124135_00167418 SCUBE3 coding downstream 118423 123577 ~ 167829 (-)
CI01000192_00116033_00116872 NA coding downstream 169380 115839 ~ 116872 (-)
CI01000192_00315657_00323729 STK35 coding upstream 27791 315573 ~ 325189 (-)
CI01000192_00345708_00354498 NA coding upstream 57481 345263 ~ 356428 (-)
G384285 NA non-coding downstream 64492 121263 ~ 221760 (-)
G384283 NA non-coding downstream 90797 119718 ~ 195455 (-)
G384247 NA non-coding downstream 214786 42296 ~ 71466 (-)
G384286 NA non-coding upstream 24536 312318 ~ 314443 (-)
G384329 NA non-coding upstream 37693 325475 ~ 325699 (-)
G384331 NA non-coding upstream 38865 326647 ~ 326991 (-)

Expression


Co-expression Network