G385529



Basic Information


Item Value
gene id G385529
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000195
NCBI id null
chromosome length 1404554
location 188622 ~ 194606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU441025
CCGAATATTGACTGTTCCCATTCGGACTACGCTTCCCATAGGCCCTCATTCCTGGGACTGATTGCGCACACACCTGCACCCCATCACGCTCACACTATTTAAGCCACACACACACACACACACTCACCGCGAAGTCTTGATTTGCCCCGGTGATCATTTCTGAGCGTTTTCTTGTGGATTGTTTATTCTGTTACTGTTGGACTGTTTACCCGTTGTGATTCTCTGCTGCCTGCCCTGAACCTTGCCTGTTTACTGGACTGTGTTTGCTTGCCGCCTGCCCTGATCTCCGCCTGTGACCCGTTACTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTTCCTGTTTATGTCTTTGCCTTTGCCGCCTGCCCTGATCTCCGCCTGTGACCCGTTACTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTTCCTGTTTATGTCTTTGCCTTTGCCCCTGTCTGT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU441025 True 463 lncRNA 0.53 2 188622 194606

Neighbor


gene id symbol gene type direction distance location
CI01000195_00170752_00172146 NA coding downstream 16244 169729 ~ 172378 (-)
CI01000195_00132902_00133243 NA coding downstream 55379 130473 ~ 133243 (-)
CI01000195_00109629_00111249 NA coding downstream 75358 108141 ~ 113264 (-)
CI01000195_00230161_00241109 NA coding upstream 34497 229103 ~ 242123 (-)
CI01000195_00267729_00269461 NA coding upstream 72741 267347 ~ 269653 (-)
CI01000195_00277321_00278413 NA coding upstream 82268 276874 ~ 278738 (-)
CI01000195_00286609_00287289 NA coding upstream 91761 286367 ~ 287315 (-)
CI01000195_00375179_00378443 NA coding upstream 179593 374199 ~ 378443 (-)
G385534 NA non-coding downstream 64776 123363 ~ 123846 (-)
G385526 NA non-coding downstream 66630 121186 ~ 121992 (-)
G385076 NA non-coding downstream 85259 103160 ~ 103363 (-)
G385056 NA non-coding downstream 141404 46858 ~ 47218 (-)
G385523 NA non-coding upstream 32862 227468 ~ 274671 (-)
G385531 NA non-coding upstream 81678 276284 ~ 281648 (-)
G385599 NA non-coding upstream 153616 348222 ~ 353014 (-)
G385632 NA non-coding upstream 191386 385992 ~ 388235 (-)
G385656 NA non-coding upstream 224479 419085 ~ 419843 (-)
G385070 NA other downstream 91103 97058 ~ 97519 (-)
G385869 NA other upstream 1005750 1200356 ~ 1209651 (-)

Expression



Co-expression Network