Gene
RNA
| Item | Value |
|---|---|
| gene id | G385722 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000195 |
| NCBI id | null |
| chromosome length | 1404554 |
| location | 680705 ~ 683279 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU441285 | True | 324 | lncRNA | 0.49 | 2 | 680705 | 683279 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000195_00540011_00558639 | NA | coding | downstream | 122066 | 539412 ~ 558639 (-) |
| CI01000195_00473436_00498770 | PLEKHG3 | coding | downstream | 181935 | 473382 ~ 498770 (-) |
| CI01000195_00375179_00378443 | NA | coding | downstream | 302262 | 374199 ~ 378443 (-) |
| CI01000195_00286609_00287289 | NA | coding | downstream | 393390 | 286367 ~ 287315 (-) |
| CI01000195_00277321_00278413 | NA | coding | downstream | 401967 | 276874 ~ 278738 (-) |
| CI01000195_00781053_00802555 | CEBPZ | coding | upstream | 97579 | 780858 ~ 802555 (-) |
| CI01000195_00823303_00824935 | MARCKS | coding | upstream | 139650 | 822929 ~ 825488 (-) |
| CI01000195_00947211_00947449 | NA | coding | upstream | 263724 | 947003 ~ 947449 (-) |
| CI01000195_00959548_00967537 | NA | coding | upstream | 275158 | 958437 ~ 967751 (-) |
| CI01000195_00972854_00976498 | NA | coding | upstream | 289069 | 972348 ~ 976713 (-) |
| G385709 | NA | non-coding | downstream | 34942 | 645237 ~ 645763 (-) |
| G385672 | NA | non-coding | downstream | 59323 | 620228 ~ 621382 (-) |
| G385617 | NA | non-coding | downstream | 213349 | 456033 ~ 467356 (-) |
| G385656 | NA | non-coding | downstream | 260862 | 419085 ~ 419843 (-) |
| G385632 | NA | non-coding | downstream | 292470 | 385992 ~ 388235 (-) |
| G385730 | NA | non-coding | upstream | 19060 | 702339 ~ 704200 (-) |
| G385609 | NA | non-coding | upstream | 230262 | 913541 ~ 915824 (-) |
| G385608 | NA | non-coding | upstream | 284057 | 967336 ~ 967390 (-) |
| G385854 | NA | non-coding | upstream | 377282 | 1060561 ~ 1061208 (-) |
| G385070 | NA | other | downstream | 583186 | 97058 ~ 97519 (-) |
| G385869 | NA | other | upstream | 517077 | 1200356 ~ 1209651 (-) |
