CI01000201_00547876_00556142 (GPM6BB, GPM6B)


Basic Information

Item Value
gene id CI01000201_00547876_00556142
gene name GPM6BB, GPM6B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 547876 ~ 556255 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000201_00547876_00556142.mRNA
CTCTTGGGACAGTAAACAAGATTCCCCAAGTGTTTCTGGAAAGGGTGGGAATAGATCCCTTTGGGATGGGAGCATTTAAGTGGCTTCATAAGAGTGTGTTGTGTGTTGTGGGTCGTTGTTTTGAATGCTGTATTAAATGTCTGGGAGGCGTGCCGTACGCGTCTCTGGTGGCCACCATCCTGTGCTTCTCTGGTGTGGCGCTCTTCTGCGGCTGCGGACACGTGGCTCTGACAGGAACCCTCACCATCCTGGAAAACCACTTCTCCAAGATCACCACGGACCATGCCATGCTGACGGACATAATCCAGCTCATGCAGTACGTCATATACGGCATCGCCTCCTTCTTCTTCCTGTACGGCATCATTCTGCTCGCCGAGGGATTCTATACCACCAGTGCCGTCAAGGAGCTTCACAATGAGTTCAAGACCACCGTCTGCGGACGCTGCATCAGTGGAATGTTTGTGTTCCTGACGTACATCCTGGGAATTGCCTGGCTTGGGGTTTTCGGTTTCTCGGCGGTGCCCGTGTTTCTTTTCTACAACATGTGGTCGACCTGCGCTGCCATGCGCTCACCGGTGGCCAACCTCACCTCCATCGAGAGCATCTGCGTGGACGTGCGTCAGTACGGTATTATTCCATGGAACGCAACACCGGGCAAAGCTTGCGGCTCAACGCTAGGTGATATTTGTAACACCAGTGAGTTCTACCTGTCTTACCATCTGTATATTGTCGCCTGCGCTGGAGCAGGAGCGACAGTCATTGCTCTGCTCATCTACATGATGGCTACCACGTATAACTTTGCTGTTTTGAAGTTTAAGAGTCGAGAGGACTGCTGCACTAAATTTTAATGCAGTTGCATCAAAGTGCCTAGAATGAGCAGCCACTGACAATATGGACTAAAATAATAGAGATGAAAACAAACGAGAGAAACATTTCATTGCTTTTGACATGTAATGTGTAA

Function

symbol description
gpm6bb Predicted to be involved in negative regulation of serotonin uptake and neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in membrane raft and plasma membrane. Is expressed in nervous system. Orthologous to human GPM6B (glycoprotein M6B).
gpm6b Involved in several processes, including extracellular matrix assembly; positive regulation of bone mineralization; and regulation of focal adhesion assembly. Predicted to be integral component of membrane. Predicted to be active in membrane raft and plasma membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000201_00547876_00556142.mRNA True 961 mRNA 0.50 7 547876 556255

Neighbor

gene id symbol gene type direction distance location
CI01000201_00473896_00474283 NA coding upstream 73440 473896 ~ 474436 (+)
CI01000201_00421647_00426906 TBL1X coding upstream 120970 420586 ~ 426906 (+)
CI01000201_00394321_00396791 NA coding upstream 150881 394152 ~ 396995 (+)
CI01000201_00254354_00285896 NA coding upstream 261814 254115 ~ 286062 (+)
CI01000201_00124616_00139299 NA coding upstream 408349 124616 ~ 139527 (+)
CI01000201_00572895_00575129 TRAPPC2 coding downstream 16464 572719 ~ 575704 (+)
CI01000201_00576577_00577506 NA coding downstream 20322 576577 ~ 578901 (+)
G387849 NA non-coding upstream 20505 498786 ~ 527371 (+)
G387848 NA non-coding upstream 58174 489405 ~ 489702 (+)
G387838 NA non-coding upstream 141431 406213 ~ 406445 (+)
G387807 NA non-coding upstream 162774 340187 ~ 385102 (+)
G387804 NA non-coding upstream 193226 322822 ~ 354650 (+)
G387862 NA non-coding downstream 32210 588465 ~ 589474 (+)
G387827 NA non-coding downstream 58676 614931 ~ 616868 (+)
G387876 NA non-coding downstream 67520 623775 ~ 623986 (+)
G387834 NA non-coding downstream 69693 625948 ~ 629376 (+)
G387857 NA non-coding downstream 88290 644545 ~ 645170 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038192 gpm6bb coding NC_007120.7 CM002893.2 54751201 ~ 54840209 (-)